General information for g10044.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as F-box/WD repeat-containing protein 7.
Parent gene
- The parent gene g10044 is located on chr_1: 7020603..7021774 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10044 | g10044.t2 | isoform | g10044.t2 | 7020378 | 7021774 |
| chr_1 | g10044 | g10044.t2 | exon | g10044.t2.exon1 | 7020378 | 7020603 |
| chr_1 | g10044 | g10044.t2 | exon | g10044.t2.exon2 | 7020669 | 7020879 |
| chr_1 | g10044 | g10044.t2 | cds | g10044.t2.CDS1 | 7020756 | 7020879 |
| chr_1 | g10044 | g10044.t2 | exon | g10044.t2.exon3 | 7020950 | 7021121 |
| chr_1 | g10044 | g10044.t2 | cds | g10044.t2.CDS2 | 7020950 | 7021121 |
| chr_1 | g10044 | g10044.t2 | exon | g10044.t2.exon4 | 7021190 | 7021774 |
| chr_1 | g10044 | g10044.t2 | cds | g10044.t2.CDS3 | 7021190 | 7021301 |
| chr_1 | g10044 | g10044.t2 | TTS | g10044.t2 | 7022219 | 7022219 |
| chr_1 | g10044 | g10044.t2 | TSS | g10044.t2 | NA | NA |
Sequences
>g10044.t2 Gene=g10044 Length=1194
AGTTGTTAGTGGTAGTCGAGACGCAACACTTCGCGTGTGGGATATTAATGATGGAACGTG
TTTGCACATTCTTGTTGGACATTTAGCTGCGGTAAGGTGTGTGCAATATGATGGAAAATT
AGTAGTATCAGGCGCCTATGACTATCAAGTCAAAGTATGGAATCCAGAAAGACAAGAATG
TATTCATACATTACAAGGTCATACTAATCGAGTGTATTCACTTCAGTTTGATGGTGTCCA
TGTCGTATCAGGCTCACTTGATACATCGATTAGAGTTTGGGATGCAGAAACTGGCGCTCT
GAAGCATACGCTAATGGGTCATCAATCACTTACATCGGGTATGGAGCTAAAAAATAATAT
ATTAGTTAGTGGAAATGCTGATTCAACTGTCAAAGTTTGGGATATCATAACAGGACAATG
CTTAGCCACACTTGCTGGTCGCAATAAACATCATTCTGCTGTAACGTGTCTTCAATTTAA
TAATCGCTTTGTCATTACAAGCTCAGATGATGGAACAGTTAAATTATGGGATGTCAAAAC
TGGTGAATTTATTCGAAACCTTGTCGCTTTAGATAGTGGAGGTTCAGGGGGAGTTGTCTG
GCGCATACGAGCAAACGATACAAAATTAATATGTGCTGTCGGCTCACGCAATGGAACAGA
AGAAACTAAATTAATGGTCCTAGATTTTGACATCGAAGGAGCTTGTTCAAAATGCTCATA
GATACATTCAATAATTATTTGAATGAAAGAATGACACAGTAATCCTTACTCAAATATTTC
ATTCATTCATGTTAAGTTTATTATTTTATTTTTAAATGACGTGAAAAAATCATTCTTCTT
CCTCGTTTTTCTTCATTTTGTTTTGTAAAAAACAAAATATCTTTTATCTTATTATTTTAG
ACTCATTTTTATAAGTTACTAAAAAATCTGTTAAATTGTTTCTTTTTCTGAACACTGTTT
TGGAGGTGATGGTAGTTGGTCAAAAATTTTGTATTTTTTTAAAAATTACTCACTGTCACA
CACTTACTATATATCTCTTTCGTACATATTGAAATTGAGTTGTTAGAATCTTTTTTTCTA
CACATATGCATAGGAAAGGAAAAATATATGCCATTATATTATAAAATAATGAAAAATGTG
AGCAATCCGAGATTATAAAAAAGATTAACAATAATAGAACAAAAAGAAATTTAA
>g10044.t2 Gene=g10044 Length=135
MGHQSLTSGMELKNNILVSGNADSTVKVWDIITGQCLATLAGRNKHHSAVTCLQFNNRFV
ITSSDDGTVKLWDVKTGEFIRNLVALDSGGSGGVVWRIRANDTKLICAVGSRNGTEETKL
MVLDFDIEGACSKCS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g10044.t2 | Gene3D | G3DSA:2.130.10.10 | - | 1 | 130 | 2.1E-35 |
| 3 | g10044.t2 | PANTHER | PTHR19849 | PHOSPHOLIPASE A-2-ACTIVATING PROTEIN | 2 | 128 | 6.4E-77 |
| 4 | g10044.t2 | PANTHER | PTHR19849:SF1 | F-BOX/WD REPEAT-CONTAINING PROTEIN 7 | 2 | 128 | 6.4E-77 |
| 5 | g10044.t2 | PRINTS | PR00320 | G protein beta WD-40 repeat signature | 17 | 31 | 3.6E-5 |
| 6 | g10044.t2 | PRINTS | PR00320 | G protein beta WD-40 repeat signature | 60 | 74 | 3.6E-5 |
| 2 | g10044.t2 | Pfam | PF00400 | WD domain, G-beta repeat | 15 | 30 | 0.14 |
| 1 | g10044.t2 | Pfam | PF00400 | WD domain, G-beta repeat | 34 | 73 | 9.9E-8 |
| 9 | g10044.t2 | ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 17 | 31 | - |
| 10 | g10044.t2 | ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 60 | 74 | - |
| 13 | g10044.t2 | ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1 | 82 | 20.435 |
| 14 | g10044.t2 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1 | 39 | 12.012 |
| 15 | g10044.t2 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 43 | 82 | 14.051 |
| 11 | g10044.t2 | SMART | SM00320 | WD40_4 | 33 | 73 | 3.1E-7 |
| 12 | g10044.t2 | SMART | SM00320 | WD40_4 | 76 | 124 | 330.0 |
| 7 | g10044.t2 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 13 | 114 | 3.11E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
