General information for g10073.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g10073 is located on chr_1: 7258725..7260648 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10073 | g10073.t1 | TSS | g10073.t1 | 7257813 | 7257813 |
| chr_1 | g10073 | g10073.t1 | isoform | g10073.t1 | 7258725 | 7260648 |
| chr_1 | g10073 | g10073.t1 | exon | g10073.t1.exon1 | 7258725 | 7258791 |
| chr_1 | g10073 | g10073.t1 | cds | g10073.t1.CDS1 | 7258725 | 7258791 |
| chr_1 | g10073 | g10073.t1 | exon | g10073.t1.exon2 | 7258850 | 7258983 |
| chr_1 | g10073 | g10073.t1 | cds | g10073.t1.CDS2 | 7258850 | 7258983 |
| chr_1 | g10073 | g10073.t1 | exon | g10073.t1.exon3 | 7259040 | 7259761 |
| chr_1 | g10073 | g10073.t1 | cds | g10073.t1.CDS3 | 7259040 | 7259761 |
| chr_1 | g10073 | g10073.t1 | exon | g10073.t1.exon4 | 7259822 | 7259946 |
| chr_1 | g10073 | g10073.t1 | cds | g10073.t1.CDS4 | 7259822 | 7259946 |
| chr_1 | g10073 | g10073.t1 | exon | g10073.t1.exon5 | 7260002 | 7260119 |
| chr_1 | g10073 | g10073.t1 | cds | g10073.t1.CDS5 | 7260002 | 7260119 |
| chr_1 | g10073 | g10073.t1 | exon | g10073.t1.exon6 | 7260177 | 7260434 |
| chr_1 | g10073 | g10073.t1 | cds | g10073.t1.CDS6 | 7260177 | 7260434 |
| chr_1 | g10073 | g10073.t1 | exon | g10073.t1.exon7 | 7260498 | 7260648 |
| chr_1 | g10073 | g10073.t1 | cds | g10073.t1.CDS7 | 7260498 | 7260648 |
| chr_1 | g10073 | g10073.t1 | TTS | g10073.t1 | 7260791 | 7260791 |
Sequences
>g10073.t1 Gene=g10073 Length=1575
ATGAATATAGATAAAGAAGATCGTGTAGCTACGGCCTTTAAAAATCAAACAATTTTCTTA
ACTGGCGGTTCTGGCTTCATGGGAAAAGTTTTCATTGAAAGACTATTGAGAGTAACAGAA
TTTGATAAAATTTATATTCTTATAAGACCAAAGAAAGGAGTTCAGCCAGAAGAAAGATTG
AGAGAGTTATTTAAAGATATGCTTTTTGTAAAACTGCTTGAAGAAATGGATATAGACACA
ATTTTAAGTAGAATTAAAGCTATTCCTGGTGATTGTGAACAACTAAATTTGGGATTATCA
GAAAATGATCGAAACTTTATTATTGAAAATATGACAATGATTTATCATTTTGCTGCAACA
ATTCGTTTTGATGAGAAATTAAAAAAAGCTGTTTTGATGAATGTGAGAGGCACAAGAGAA
ATGATAAAACTCGCATTAGATTGCAAGCAGCTAAAATTTTTTGGTCATATGTCGACAGCT
TATTGTCATTTACATGTTCCATTTTTATTGGAAAAACCTTATGATCCACCAGCTGATCCA
CATGAGATTATTCAAATGATTGAAGAAATGGATAAACCAGAAGAAGAAATTGAAAAATTT
TCTAAAATTCTTCTTGCTAAATTCAAATTGCCAAACACTTATGCATTTACAAAATCAATG
GCAGAATCTCTGGTAGTGCATGCTAAAGAAAAATTAAATTTGCCTGCCATGATTTTCCGT
CCATCGATTGTAATTTCAACTTGGCGTGATCCATTGCCTGGCTATATTGATAATTTTAAC
GGTCCAGTTGGTATGCTTCTTGCAGGAGGTAAGGGAGTTGCAAGAACAGCTTATTGTGAT
CAAAAGAGTTATGGTGACTTCTTACCCTGTGACATTGCAATTAATGGTGTTTTTGTATGT
ACATGGAATTTCTTCAACTACTACAATCCCGAACATTTCATCATTAATTTTACAAGCTCA
CAAGAAATTCAATTTTCATGGGAACAAGTTAGTAAATTAGGAATGCTCGTAGCTGAACAA
AAATATCCTTTGAATCAAATATTCTGGTATCCAAATGTTGCAATGACTAAATATCGATGG
TTGCACAATGCTAGAGCTTTCTTTTTCCATTGGATTCCAGCATATGTTGCTGACTTTTTC
CTTGTATGTTTCGGCTATGAACCATTTATGAAGCGTGCAGCAAGAAGAATTGCAAAAGGA
ATGGAAGTTGTTGAATATTATGCTATGAACCAATGGGATTTTGACAATAAAATTCAATGT
ACATTTAGAGAACGATTGAATGATTTTGAAGAGGATAGATACAAAGTTAATTCAAAGGGA
ATTAGTCATCAGCAAATATTGACAGATGCCGCGTTAGGTTGTAGACGATATGTTCTTAAA
ACTCCTGACCATATGCTTCCTGCTGCTTTTGCTGAAATGAGAAGAATGTACATCCTTGAT
AAAACATGCAAGACAATAATTTATGGTGCTCTGCTTTATTGGTTGTATGGATTAATTTTA
GCTTTAGCTTCTGGTTCAAATATTTTCTTTACAATTATTAAAATAGCCATTTGTTTATTC
TGTTTTATTCTTTGA
>g10073.t1 Gene=g10073 Length=524
MNIDKEDRVATAFKNQTIFLTGGSGFMGKVFIERLLRVTEFDKIYILIRPKKGVQPEERL
RELFKDMLFVKLLEEMDIDTILSRIKAIPGDCEQLNLGLSENDRNFIIENMTMIYHFAAT
IRFDEKLKKAVLMNVRGTREMIKLALDCKQLKFFGHMSTAYCHLHVPFLLEKPYDPPADP
HEIIQMIEEMDKPEEEIEKFSKILLAKFKLPNTYAFTKSMAESLVVHAKEKLNLPAMIFR
PSIVISTWRDPLPGYIDNFNGPVGMLLAGGKGVARTAYCDQKSYGDFLPCDIAINGVFVC
TWNFFNYYNPEHFIINFTSSQEIQFSWEQVSKLGMLVAEQKYPLNQIFWYPNVAMTKYRW
LHNARAFFFHWIPAYVADFFLVCFGYEPFMKRAARRIAKGMEVVEYYAMNQWDFDNKIQC
TFRERLNDFEEDRYKVNSKGISHQQILTDAALGCRRYVLKTPDHMLPAAFAEMRRMYILD
KTCKTIIYGALLYWLYGLILALASGSNIFFTIIKIAICLFCFIL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g10073.t1 | CDD | cd05236 | FAR-N_SDR_e | 17 | 333 | 3.91892E-105 |
| 17 | g10073.t1 | CDD | cd09071 | FAR_C | 368 | 459 | 2.63374E-18 |
| 8 | g10073.t1 | Gene3D | G3DSA:3.40.50.720 | - | 4 | 359 | 9.5E-64 |
| 3 | g10073.t1 | PANTHER | PTHR11011:SF61 | FATTY ACYL-COA REDUCTASE | 4 | 499 | 1.3E-177 |
| 4 | g10073.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 4 | 499 | 1.3E-177 |
| 1 | g10073.t1 | Pfam | PF07993 | Male sterility protein | 20 | 295 | 2.4E-67 |
| 2 | g10073.t1 | Pfam | PF03015 | Male sterility protein | 369 | 460 | 1.9E-19 |
| 12 | g10073.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 366 | - |
| 14 | g10073.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 367 | 386 | - |
| 10 | g10073.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 387 | 484 | - |
| 13 | g10073.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 485 | 502 | - |
| 11 | g10073.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 503 | 507 | - |
| 15 | g10073.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 508 | 523 | - |
| 9 | g10073.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 524 | 524 | - |
| 7 | g10073.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 12 | 267 | 2.47E-26 |
| 6 | g10073.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 367 | 389 | - |
| 5 | g10073.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 491 | 513 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
