Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Mannose-6-phosphate isomerase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10145 g10145.t6 TSS g10145.t6 7762722 7762722
chr_1 g10145 g10145.t6 isoform g10145.t6 7762798 7764109
chr_1 g10145 g10145.t6 exon g10145.t6.exon1 7762798 7763623
chr_1 g10145 g10145.t6 cds g10145.t6.CDS1 7763381 7763623
chr_1 g10145 g10145.t6 exon g10145.t6.exon2 7763681 7764109
chr_1 g10145 g10145.t6 cds g10145.t6.CDS2 7763681 7764109
chr_1 g10145 g10145.t6 TTS g10145.t6 7764172 7764172

Sequences

>g10145.t6 Gene=g10145 Length=1255
ATGGAGATTTTTGGTGATATTAAAAATTATGATTGGGGAAAATTAGGTGGAGAGAGTGAA
GTTGTGAAATTGGTGCAATTAAATGATGATTCATTTGTTGTTGACAATAAAAAGCCATAT
TCTGAGTTATGGATGGGCGATCATGTCTCTGGACCATCAAAAGTTAAAGCAACTGGTGAA
AGTCTTGGTGAATTTATACAAAAAGACCTCAAGGGAAATATTGGTGGACAAGCAAAACTC
CCATTTCTTTTTAAAGTGCTTAGCATTAGAAAAGCTTTGAGCATTCAAGTTCATCCTAAT
AAGTCTGAAGCTGAACGCTTACATTCGCTTTATCCTGATATCTATAAAGATGCGAATCAC
AAGCCCGAGGTGAGACATTGAGTCAAGTTTACATTCAATGTATAACTGAACAACTTTCGC
TCCTTTTTAGATTGCAATTGCATTGACACCGTTTCTAGCGTTATGTGATTTTCGTCCACA
CGGTGAGATCTATCAACTTTTGAAATCTCATAATGAACTCGTTGAACTCTTGGGTAGTGG
CAATATTGACTTAATTAATTCTAATGGAGCTGATGGATTGAAGATGTGCTACAGTAAACT
TATGAAATGTGATGATACTAGCATTCGCAAGTGCATTGACTCGCTTACTGACAAATTTAA
AAATGATAACAGCAAACTTGCTGAAGTGTTCAATCAAATTCAAAAAGATTTTCCATATGA
TGTTGGTTCATTGTCGTTGTTTTTCTTGAATCTTATTGAAATGAAACCTGGACAGTCAAT
TTATTTGGCAGCTAAAATTCCTCATGCTTATCTTTTTGGTGATTGTATTGAATGCATGAG
TTGTTCCGATAACGTCGTTAGAGCTGGACTAACACCAAAGTTCAAAGATGTTGAGAATTT
ACTTAGCATGTTGATTTATGATGGAAGAAATGCAAATGAAATTCTTTTTAAACCAGAAAT
GATTGATGAAAAACATCAATTTACTTCACTCTTTCGACCACCAATAGATGACTTTGCTGT
GGCAAAAGTTGAAATTCCTCAAAGTGTCAAAGACTACGAAATTGTCAATAGCAAATTTGG
GTCAATTATTTTAGTGATTTCTGGCAGTGCAATAATGTCTGCATCTGGTATGGAGACATT
AAACATCAAAAGAGGCTCAATTATTTTCGTGCCATCGAGTGTCGGTCCTTCACTGAAATT
GTCCAACATTGAAAACAATCTCATTTGCTATCAAGCAATGTACAATGATTTTTAA

>g10145.t6 Gene=g10145 Length=223
MCYSKLMKCDDTSIRKCIDSLTDKFKNDNSKLAEVFNQIQKDFPYDVGSLSLFFLNLIEM
KPGQSIYLAAKIPHAYLFGDCIECMSCSDNVVRAGLTPKFKDVENLLSMLIYDGRNANEI
LFKPEMIDEKHQFTSLFRPPIDDFAVAKVEIPQSVKDYEIVNSKFGSIILVISGSAIMSA
SGMETLNIKRGSIIFVPSSVGPSLKLSNIENNLICYQAMYNDF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g10145.t6 Gene3D G3DSA:2.60.120.10 Jelly Rolls 9 94 0
9 g10145.t6 Gene3D G3DSA:2.60.120.10 Jelly Rolls 117 221 0
2 g10145.t6 PANTHER PTHR10309:SF0 MANNOSE-6-PHOSPHATE ISOMERASE 2 221 0
3 g10145.t6 PANTHER PTHR10309 MANNOSE-6-PHOSPHATE ISOMERASE 2 221 0
4 g10145.t6 PRINTS PR00714 Phosphomannose isomerase type I signature 39 54 0
7 g10145.t6 PRINTS PR00714 Phosphomannose isomerase type I signature 55 74 0
6 g10145.t6 PRINTS PR00714 Phosphomannose isomerase type I signature 74 93 0
5 g10145.t6 PRINTS PR00714 Phosphomannose isomerase type I signature 93 112 0
1 g10145.t6 Pfam PF01238 Phosphomannose isomerase type I 2 181 0
8 g10145.t6 SUPERFAMILY SSF51182 RmlC-like cupins 2 204 0
11 g10145.t6 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 8 202 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008270 zinc ion binding MF
GO:0005975 carbohydrate metabolic process BP
GO:0004476 mannose-6-phosphate isomerase activity MF
GO:0009298 GDP-mannose biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values