General information for g10145.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Mannose-6-phosphate isomerase.
Parent gene
- The parent gene g10145 is located on chr_1: 7764109..7766532 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10145 | g10145.t7 | TSS | g10145.t7 | 7762722 | 7762722 |
| chr_1 | g10145 | g10145.t7 | isoform | g10145.t7 | 7763604 | 7764109 |
| chr_1 | g10145 | g10145.t7 | exon | g10145.t7.exon1 | 7763604 | 7764109 |
| chr_1 | g10145 | g10145.t7 | cds | g10145.t7.CDS1 | 7763690 | 7764109 |
| chr_1 | g10145 | g10145.t7 | TTS | g10145.t7 | 7764172 | 7764172 |
Sequences
>g10145.t7 Gene=g10145 Length=506
CTTATCTTTTTGGTGATTGTGTAAGTTTTACTAAAACTATAATATAAATATTTTATTTAA
TCTTATACATTTTTTAGATTGAATGCATGAGTTGTTCCGATAACGTCGTTAGAGCTGGAC
TAACACCAAAGTTCAAAGATGTTGAGAATTTACTTAGCATGTTGATTTATGATGGAAGAA
ATGCAAATGAAATTCTTTTTAAACCAGAAATGATTGATGAAAAACATCAATTTACTTCAC
TCTTTCGACCACCAATAGATGACTTTGCTGTGGCAAAAGTTGAAATTCCTCAAAGTGTCA
AAGACTACGAAATTGTCAATAGCAAATTTGGGTCAATTATTTTAGTGATTTCTGGCAGTG
CAATAATGTCTGCATCTGGTATGGAGACATTAAACATCAAAAGAGGCTCAATTATTTTCG
TGCCATCGAGTGTCGGTCCTTCACTGAAATTGTCCAACATTGAAAACAATCTCATTTGCT
ATCAAGCAATGTACAATGATTTTTAA
>g10145.t7 Gene=g10145 Length=139
MSCSDNVVRAGLTPKFKDVENLLSMLIYDGRNANEILFKPEMIDEKHQFTSLFRPPIDDF
AVAKVEIPQSVKDYEIVNSKFGSIILVISGSAIMSASGMETLNIKRGSIIFVPSSVGPSL
KLSNIENNLICYQAMYNDF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10145.t7 | Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 32 | 137 | 0 |
| 2 | g10145.t7 | PANTHER | PTHR10309:SF0 | MANNOSE-6-PHOSPHATE ISOMERASE | 1 | 137 | 0 |
| 3 | g10145.t7 | PANTHER | PTHR10309 | MANNOSE-6-PHOSPHATE ISOMERASE | 1 | 137 | 0 |
| 1 | g10145.t7 | Pfam | PF01238 | Phosphomannose isomerase type I | 1 | 97 | 0 |
| 4 | g10145.t7 | SUPERFAMILY | SSF51182 | RmlC-like cupins | 1 | 121 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008270 | zinc ion binding | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0004476 | mannose-6-phosphate isomerase activity | MF |
| GO:0009298 | GDP-mannose biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
