Gene loci information

Transcript annotation

  • This transcript has been annotated as histone-arginine N-methyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10167 g10167.t1 isoform g10167.t1 8014494 8024892
chr_1 g10167 g10167.t1 exon g10167.t1.exon1 8014494 8014667
chr_1 g10167 g10167.t1 cds g10167.t1.CDS1 8014494 8014667
chr_1 g10167 g10167.t1 TTS g10167.t1 8014530 8014530
chr_1 g10167 g10167.t1 exon g10167.t1.exon2 8014731 8014906
chr_1 g10167 g10167.t1 cds g10167.t1.CDS2 8014731 8014906
chr_1 g10167 g10167.t1 exon g10167.t1.exon3 8014980 8015113
chr_1 g10167 g10167.t1 cds g10167.t1.CDS3 8014980 8015113
chr_1 g10167 g10167.t1 exon g10167.t1.exon4 8015181 8015485
chr_1 g10167 g10167.t1 cds g10167.t1.CDS4 8015181 8015485
chr_1 g10167 g10167.t1 exon g10167.t1.exon5 8015543 8015613
chr_1 g10167 g10167.t1 cds g10167.t1.CDS5 8015543 8015613
chr_1 g10167 g10167.t1 exon g10167.t1.exon6 8015674 8023107
chr_1 g10167 g10167.t1 cds g10167.t1.CDS6 8015674 8023107
chr_1 g10167 g10167.t1 exon g10167.t1.exon7 8023167 8023640
chr_1 g10167 g10167.t1 cds g10167.t1.CDS7 8023167 8023640
chr_1 g10167 g10167.t1 exon g10167.t1.exon8 8023703 8024438
chr_1 g10167 g10167.t1 cds g10167.t1.CDS8 8023703 8024438
chr_1 g10167 g10167.t1 exon g10167.t1.exon9 8024737 8024892
chr_1 g10167 g10167.t1 cds g10167.t1.CDS9 8024737 8024892
chr_1 g10167 g10167.t1 TSS g10167.t1 8024945 8024945

Sequences

>g10167.t1 Gene=g10167 Length=9660
ATGTTCAATAAAACGAAATTTCCAGGAAAGCCATCCAAAGTAGTGAATAAGAAGCGTGTT
AGTGTTTTATCGTTCGATAATAATTTTGACAAAAGAGCAAACGATCGTTGTGAAATTGAC
AGTGAAAAAAATTTGGCATCAAAACATGGCTACCAGACGGAAAGTGCAACAACAACAACG
GCAACTGCAAAACAGTCAGCGGAGGAGAGCGAAGAAAAGTCGAAACCAGTTATGACAACT
GAAGAGACAGAAAATAAAAATTTAACAACATCAGTAGCCGCGAACGAAGAAAAAATGGAA
ACAAATAAGGAGACAAAAAATATTAAAAATGATACAAATTGTGATAATTTAGATAAAAAG
ACGAAAAATTTAAAGAAGCATGTGACATTTCGACAAACGGTAGAGACGAGTGATCAGTGT
AAAGTGAAGCGTGTCTATAATCCGAATTTCAACGGACCTATTGTTTCAATTATTAAAAAA
GAGTCTCTTAAATATCCAATTTTGGTGTATAAAACCAATTGCATTGTTCGACCGTCAAAA
TTGACAGAAATTGTGAGGAATAGTGCGAACAATATTGATAAATTAAATTCACTTAGATTT
GGGCGCGAATATGCTAATCAACATTCACAACATACATCTGATGGTACCAATAAATCATTA
TCATCTGCTTCATCGTCATCATCAAATGTCATTGTTGCCAGTAAATTTAATCTCCCCAAA
TTGAGTGCAAACTCATCGCGAGTAATTAAACCCAACAAAAGATTACTCTTTGATTCGGGC
GAGGATACTTCGTTAGCTAGTAAGAAGAAAGTCATTAAACCCAGTTTTTGGGGTGAGGGA
GGAAGTGAACAAAGTTCGAGTTCTTCACTTTTGAAAGAGAAGAAAAATTTCGGCTTTAAT
TTTGTCGATGAATTAGATCTGAAGTCAAAGAAATCAAAAGTTTCAACATCATTAGCATCA
ACATTACCTTCAGCTACAACTTCTACACTTACGACAGTCACTGAAAGTACAAGTAAAGCT
GATGACAGTTCTAATAAACTCCTCCTATCACAATCAATTCTAAGGAAGCCAGTGCTTCAG
CTCTCTACGAATTTTAGTCTATTTGGATCGCAAGAACGTGATTCGAGTGCACTTAAAAGT
CCATTTTCTCTTAAACTCGATTCATCAAATAATACATCACCTTCCACATCGACAGCGATT
TTTACAAAATCTTTGGTGTGTAATGTATGTAACTCCATAACAACTCGTAAACAACCGCGA
AAGTATGGAGCAATATGCTGTGAAATTTGCAAAAAATTTATGTCAAAAATAATTGAGCGC
GTAAACAAGCATCCTGTACAAAATTGGCAGTGCGATAAAGGAGACGGTTCATGTACGATA
GAGTCAGTAGCATTAAAGAATACAAAACCATCAAAACTTGATATTAATATGAAAATTATT
AGCAAAGGACGATGTTATGCATGTTGGCTTAAAAAATGTTTACTTACTTTTCAATTACCA
TCTCCACTCAAAGCGCGTTTAACAAACGTTCTGCCGAAGAGTTTGATGGAGCCTTCAAAA
TCAGTGGTCTTATCAAACACAAACAACACAAACTCGGATAACTCAAATATATTTTTAAAT
TCACTCAAGTCATTTTCTTCATTCAAATTGTCATCAAATCCTTTGGCCATAAATAATTTT
ACATTTGGTTCAAAGCCTGATATTAAATCTAGTTTTGACAATGTATTGAAGAATGCATTT
ACGAGTGATAAGCCTTTATTGGTTGATATACCAAAGGAAGCGGCAGCATCAACATCTTCA
TCAACTCCACTATTATCAACAAGTGAGACTAAAAAGTCACCAAAATCTCCAAAGGGATCT
CCTAAAGTAGTTTCACCTAAAGTGGCATCAATATCACCTTCAACATCACAACAGCAGCTA
ACAAATTCATCACAAAATCAAATTATTCATCCATCAAATGTTGCAACATCTGATAGTCTA
AGACAGAGGAATTTAATTAAAGGTCCTCGTGTGAAACATGTTTGTCGGTCTGCTTCTCTT
GTGCTTGGTTTACCGATTGCCGTTTTCCCTGGTGATTCTGAATCTCAGAATGCAGAAGAA
AATGCTGCAACAGAGACAATTGTGACTGATGATCAAATGTTGAATGAGAATTCAGAAAAG
GAAAATGTTGCATTTACAGCGATAGAAACAAAAGCTGAAGAACTTATTGAACCGAATAAA
GAAAAAGAATTATCACAGAAGAATGAAGAAACAAATATTGTCGTTGAAAAAGTTGAAGAA
GCAGAAATAAATGAAGAGAAGGAAAATATCAAATCGAGATCTGAAATTGCAATTAATGAT
CTACTGGCGATAAGAAAGATTGAAACAGCAGACATTTGCAAACCAATAACACGTAAAGTG
ACACGACCAACTCTTACATTATCTCAAACACAAAATGCTACAATGAATCGAATATCAATG
AAAATTCCAACATCAAAGCGACTTTTATTTAATCAGCATATGAGAAATAACAACAGTAAT
TTACCGCCAATGATATCGATAGATTTTTGGGAAAATTATGATCCAGCTGAAGTCAGTCGC
ACAGGTTTTGGACTCATATTAAGTGAGAAAACACCTATAAAGTCAGTTTGCTTCCTCTGT
GGTAGCTATGGAACTGATCCTTTAATCTTCTGTGTATGTTGCTGTGAACCTTATCACTTT
TTTTGTGTTGAAAATGAATTTAATGTAAGATTTAAGACAAATAGTTTTTTAAACACATCA
TCATCACAAGTAAATGAGTCAACAGATGACATCAATCTCAACATTTCTGCCGATGATTCC
GGTGCATTAGTAGAACGTGGATATGACATGCCTCTTAGTAAACGACTTAATTGGTTGTGT
CCACGATGCACTGTTTGTTATACTTGCAACATGTCGACTGGTGTGAAAGTTAAATGCTGG
AAATGTGAAAAGAATTATCACACGACATGTTTAGGAACAAGTAAACGTTTACTTGGAGCA
GATCGACCCTTAATATGTGCATCATGCTTAAAATGCAAGTCATGTGGAACGACAAATGTA
ACAAAATTTATTGGTAATTTAGCCATGTGCAGCAATTGCTTTAGACTACGAAGAAAAGGA
AATTATTGTCCGTTGTGTCAAAAGTGCTATGAAAATAATGATTATGATGTCAAAATGATG
GAGTGTGGTGACTGCAAAAGATGGGTGCATTCAAAATGTGAAGGACTAACTGATGAACAA
TATAATCTCTTGAGTGTATTACCAGAACATATTGAATTTATATGCAAAAAGTGTTCCCCG
AACAATTCATCATCAAATATTTGGCGGGAATCTGTTGAATCAGAATTTAAGACAAGTCTG
TTATCAGTAATAAAACTACTTAGTAAAAGTCGACATGCATGTGCTCTTCTTCGTCTTAGT
CCAAGGAAAAAGAATTCATCTTGCTTCTGTGCTGCATCGAAGAACAATATTAATGGTAAT
AACTCATATCCTACAAACTTCAATTCATTATTTGATGCATTGAAGACTGAAGACAGTATT
GATCAAAATGAACCGCAGAAAATACAATGTACATGCTTCAACAATAACAGTTTGCAAATG
AATACTCTTAAACCTAATATAAGTTCGATCAAGCAGAGTATAAACGATAACAAGTATCAT
TCGTTGCAAGCATTCAATTATGATATGAACAAAATCCTCAATGATGCTCAGTCAGAGGAC
TTGGTAATTGCATATAATGAAATAATAAGTGAAATATTCCCATGGTATCAAAATGAAACT
AAAGCATGCACAGATGCACTTGAGGAAACGATGAATGACCATTCAAAGAGTGATTTATTA
GACAACTTGATATGTGAGAATGAAAATAGTGAATATTTTATGATGACAAGCTTTAATGTT
CCTGAGAATCTAATAAAAAATGAAACTGATTACATGCAAACAATTTTCTTCAATGAAAAG
GATAATCGTGCTTGTATGCTATGTAAGAAAGAAGGAGAATGCTCATCGGAAGAAGAAGGT
AGATTGCTTTATTGCGGTCACAATACGTGGGTTCATACAAACTGTGCACTCTGGTCTGCT
GAGGTTTATGAGGAAATCGATGGATCACTTCAAAATGTACATAGTGCAATCTCAAGAGGA
CGTTTAATCAAGTGCAGTAAATGTGGCATCAAGGGAGCTACGGTCGGCTGTAATTTTAAA
AATTGTGGTGAACAATATCATTTTCAATGTGCTCGCTCAATATGTGAATTTAGGACTGAT
AAGAGTGTCTATTGTCCATTGCATCTTTCAAAAGAGACTGATGAAGAAAAACCACAACTC
GAATCTAATTTCCAAGTCAATCGATCTGTTTATGTCGAATTGGATCGAAGGAAAAAGAAA
ACTGTAGAAGCATCAAAAGTTCAATTTCTTATTGGATCTCTATACGTCACAAAATTAGGT
AGAATAGTTCCGATATTAAGTGACGGCGGAGATTATTTGATTCCAATTGATTTTGAATGC
ACGCGTTTGTTTTGGTCATCAAAACATCCATGGAATATTGTTGAGTACAAAATTAAAATC
TCAATTCAGCGTTCGAATCATCACACGATGACAATTGATAAAGGAATAAATTTTACTGTT
GATCACACTAAGAGTGTTCAGGCTATTCAAAAGAATTTGAAACAAATTGCATTATTTCAT
AGTTCAATTGTCAAGGAACAAGAGACAATGGTTCAAGAAGAAACACAAGATGAAGAAGCA
CCAAATCAAACTAATGATTTGCTTCCACCAGAAATTAAAGCAGCTATTTTTGAGGATTTA
CCACATGATGTTCTCGATGGTATTTCAATGTTTGACATTTTTCCAAATCCTGCTGATACA
AAAACAACATTTTTCAATCATGTGTCAGATGAGGATGATGAAAGTAGCAAGAGTAATCAA
GTAAATGGAGATGGTGATGTTGATAGTGATTTTAATGGATTGCTAAACTCAATTCAAAAT
GAATTTTCTACTGAATACTCGTTTAGTAAGCGTGATGAGTCAGAATCAAAAAAGAGAAAA
ATAAGTAATGCAACAGAGAATAATGATAGCAATAATAATCCTGATAGTAAAGAGCAAGAA
CAAAAATCAACTTCTAGTATGACACTTCAAAAATACATCAATCAACAGAATGAGCTTAAA
AATAATAGTAAAGATTTTATCGATAAAATTCCACAACTTGATGGACTTAATGATGAAATT
TTAATGCAATCTGATGGTCCAGTTGCATGTGAAAAATGTCGGTGTACATATAGAAATCGA
ATATCGTATGAACGTCATTTGGCTACATGTGATAATATTCAAAATACTAGTGAAAGTGAC
TCAGAAGCTCCTGATGGTGCGCAAGTGTATTTGTCAAATGCTACATCTCAGGCAATAACT
GGAATTGGTGGTAATAATGTGATTTCTGTAATTAATCAACAACAAAATCAATCTCTTGCG
ACTTCAATTCCAATTGTTATCAATAATCCATTAACCACACAGAATGGTCTTGCTATTGCA
AATGGAGTTCAAATTCCTAATTTGCAAAATCTATCATTGACACTCGGAAATGATGGAAAT
TTATGTCAAAATGTGATAGTTGACCAACAAGGACAACAAATTTACACTCAACCATTACAG
CTTGGACAATTTGGACAAGCTGCCACAATAATGCCTATAAGGAATTTTAATCAAGCAAAC
GTTATTAATAATGGTGGTATATCATACTTATCAAATTCAACTCAGCAGCAACCAGCCCAA
TTTATTCAACTTGCACCGGCAACAAATGGCACAAACACTCAACAAATAATGACAATTACA
TCACAACAGGATCAAGAGCATCAAAAAACACAAAAGAAACCGCTCCTGTTGCCATCACCG
ATCAAGGCTAAGCCTTCAAAAGCAGGAAATGTCATAAAAAATAGCTCAATCACTACAAGC
AAGAAGAAACTTGAAACTTTATCGACAAAGTCACAACAGCAGCAAATTTCAGTTGTCAAT
TCTAAAAATGTTCAAATTGCTAATTTTCAATCATCAATTTCGCCTCGTACTAACTCAACA
CAGTCAGCTTCAACCATTTCACAACCGACAAGTGCACAAAACATTATTTTTCAACAACCT
GCTCAACAAATTGCACCACAACTTAATCAATATCCATTGATACTTAATCAAAATGGTCAG
CTTGTTCAGTACATTTCAACAGATGCACAAAATAATCAACCAATTCAATATATGCAAATT
GGTGGAACAAATACAAAGGACATCAAAAATGGTTCACAAAATTTCATTACAAATGCACAG
CAAACTTCAACAGTTGCGAGTCCGCAAATATTTCAAAACTCGTTTCAAATGCCGGCAAAT
AATTCGAGTAATCTAGTGTTGACACCAAATGGTTTGTCAGTTTTGCCAGTCGTTCCTCAA
TCACCAATTGTTGGTACAATAATTCAACAACCACAAGCATTGCAGTGTGTAAATGGTGTT
GTATCAACAGAACAAATGATGTTAGGTTCAACACCAACAGCTATTGAAATGGATCCATCA
TCAGGATGCATGTATCTCACATCACAACCTGTTTATTATGGTCTCGAAACAATTGTTCAA
AATACAGTGATGAGCTCACAACAATTTGTTTCTACTGCAATGCAAGGAATTTGTCAAAAT
TCTAGCTTTAGTGCAACAACAACACAAGTGTTTCAGGCTAGCAAAATAGAGCCTATTCAA
ATGGAAATACCTGCAGGTTATGTATTTTTGAATGCATCTGATGGATCAATTCATCAATCG
CAAATAATGGATTCATCATGGAATTCTATTGATGAAAAGAAACAGACTGTTGAAATCAGT
GGCTCTTATGGTAATCAAAAGTCACAGAATGTTATTTTAAAGTCAAATTTATCAAATCAA
AAGACTAAAGTGCAAGCAAAAGTAAACAAAATTCAACCGCAAGTAGTCAGTAAAATTATG
TCACCAACATCAGCGTCTATTAACGTTTCAACATCAAACATCAATACAACTACCGTACTA
AAAACTGTTAATAGCGATAATTCTACAAAAATGCATAGCCAGCAGCAGCAAAACATTCAA
ATTGTAAACCAAAATGCAATAATTGCAAAGCGACAAAAGGCAACATACAGAACGATTGGG
CCGAAAATAGCGCAAGAAGAAGTTGTTAAAACGACATCATCCGCTGCATTGATAAAACCT
AAATTGAAAGTACAAGCAAAGCCTATTCAACAGAGCAACAACTATCAGTCAATAACATTA
AAACCAGCAGGAATGAATTCTTCTGCTACTCCTTTTATGACAGATCAACCACAGCTTGAT
TCTCAACCATTACAGCAGCAACCACAGTCTCATCCACAAGTGCAAAAAATTACATTAGAT
CAAACTTATAGAAATGTACAGAATAATATAATAGTTGGAAATACTAATAGTGTTAAACCC
AAAATAGATAATCCTTCCACATCAACTGTGCAAACGACAGTCATTAATTTGCCAACAAAT
GTTGTCAATCCTATTCAGCAACAAAACAGTATATTCAATAATCTCAATAGCAAGAATCAA
AATTCATCTGTTAAACCACATTTTCAAAATCGTCCAACTAATCGAGTATTGCCCATGCCG
GCAAATGCTGCAAATGTTGCAACGGTAAAATGTAACAGTAACATTAATAAAATTGGCAGC
AACATCGGAAAGGCAAATAATCAAAATAGTAGCAATAATAATTTATCATGTGCAAATACA
GGTAGCAATGCATCTTTAAGAAACTCTTCGCCATCAATAATTGATAATCAAAATATTGGA
ATAAATAATAATGTAGTCACACCGACACATAATGGCGAGAGTGAAAATTATTGTGAAAAA
ATTAAATCGATTGCAATGGAATTGCAAAGTAGTAATAAAGCTGATGAGCTATTTGATGCT
CTTAGGCGGTCAACAACTATCAATAATGTGATTACTATAAGCTCAAGTGATAATTTTGTG
GAAAAAGGAGATAAAAAGTTAAAGTTATCTACACCAACATCTTCACCTCGATCAAATGAT
TCCTATATGATACCTTCAACAAGTGCATCAAGTATATCATCTCATCCGCCTAAACCTGTT
ATTACTAAGACTGCAAGTGTTTGTTCCTTAACAAAAACTATCGATTCCGTTGCTACAGGT
GCTAATCTACTCGATGATGATCAATCTCAATCAGTATCACCTCCTATTGATTTAATTCCT
TCATCAATAACAATCACACCCATCGATCCACCACTATCAATGACACCTATGGAAGTTGAA
AAGCCAATAATAACAGAAGAAGAACCAATGGAAACTGTTGATAAAATTAATATTGAATCA
ATAATGTTTGAAGAGATGCCAGAATTAAAAGGCTCTAAAGATACAATGTCATCATCTAGT
GAAATTATTACAGCAGAAGATGAAGTTGAAGACATGAAAATCCAAGAAAAATCTACTTTC
CAAACATATGATGAAGAGACGACCTCAGATCGTCCTAGTTTATCGTCAATTGGATCTACT
TATGCAACAAAAGCATCACGTGAAAAGACTCCAACAAGCACAACTTCAAGTAAAGCATCA
GGTCCAAAACTACTATTTGAAATTCAATCGCAAGATGGTTTTACATACAAATCGACTTCA
ATTAATGAGATTTGGGAGAAACTGTTTGAAACAGTTCAGTTGGCGAGAAAGGCTCATGGT
TTGTTACCATTACCAGAGGGAAGACTTAATGAGATGACAGGTGAACAAATGTTGGGACTT
AAGACAAATGCATTAAAATATTTATTGGAACAATTACCAGGAGTTGAAAAATGTACAAAA
TATTCACCAAAATATCATCGAAGAAATTCATCGGCATCATCGTCATCTTCGGCATCATCA
TTTTCTTCAATGAATGGAAATTGTTCTAGTATGAGTGGTTTTTATGGAAGCAGTTCATTT
TCATCGAATGCTTCAAATTTGTCTTCGAACTCATCAATATCTGCCTCACTTACATCCCTA
AATCAATACATCAACGAGTCTGATGAAATTCTTTATGAAAATATTTATGGTTGTGCAAGA
TTTGAGCCTTTTAGTACGAGATCAGATTACGATATGTTTAGTTGGCTTGCATCTAGACAT
AGACTTGCGCCAATGCCTGTACATTTACAAAGCAATAATGAAGAAGTAATTTTAAGACGT
GGAACTGGTAGCAATCTTCCAATGGCTATGAAATATCGAACATTGAAGGAAACATATAAA
AAAAGTGTCGGTGTATATCGTTCTCATATACACGGTCGTGGGCTTTTCTGTACAAGAGAC
ATTGAAGCTGGTGAAATGGTAATTGAGTATGCTGGTGAACTTATAAGATCAACATTGACT
GATAAACGTGAACGTTATTATGACAGTAAAGGAATCGGATGTTACATGTTTAAGATAGAT
GAAAATCTTGTTGTTGATGCAACAATGAGTGGAACAGCGGCACGATTCATAAATCATTCA
TGTGATCCAAACTGCTATTCGAAGGTTGTTGACATTTTGGGTCAAAAACACATCATAATA
TTTGCGCTTCGTCGTATTGTGACAGGCGAGGAATTGACATATGACTACAAATTTGACATC
GAAGACAACAAAATTCCATGCTGTTGTGGTGCAAAACGCTGCAGAAAGTATATGAATTAA

>g10167.t1 Gene=g10167 Length=3219
MFNKTKFPGKPSKVVNKKRVSVLSFDNNFDKRANDRCEIDSEKNLASKHGYQTESATTTT
ATAKQSAEESEEKSKPVMTTEETENKNLTTSVAANEEKMETNKETKNIKNDTNCDNLDKK
TKNLKKHVTFRQTVETSDQCKVKRVYNPNFNGPIVSIIKKESLKYPILVYKTNCIVRPSK
LTEIVRNSANNIDKLNSLRFGREYANQHSQHTSDGTNKSLSSASSSSSNVIVASKFNLPK
LSANSSRVIKPNKRLLFDSGEDTSLASKKKVIKPSFWGEGGSEQSSSSSLLKEKKNFGFN
FVDELDLKSKKSKVSTSLASTLPSATTSTLTTVTESTSKADDSSNKLLLSQSILRKPVLQ
LSTNFSLFGSQERDSSALKSPFSLKLDSSNNTSPSTSTAIFTKSLVCNVCNSITTRKQPR
KYGAICCEICKKFMSKIIERVNKHPVQNWQCDKGDGSCTIESVALKNTKPSKLDINMKII
SKGRCYACWLKKCLLTFQLPSPLKARLTNVLPKSLMEPSKSVVLSNTNNTNSDNSNIFLN
SLKSFSSFKLSSNPLAINNFTFGSKPDIKSSFDNVLKNAFTSDKPLLVDIPKEAAASTSS
STPLLSTSETKKSPKSPKGSPKVVSPKVASISPSTSQQQLTNSSQNQIIHPSNVATSDSL
RQRNLIKGPRVKHVCRSASLVLGLPIAVFPGDSESQNAEENAATETIVTDDQMLNENSEK
ENVAFTAIETKAEELIEPNKEKELSQKNEETNIVVEKVEEAEINEEKENIKSRSEIAIND
LLAIRKIETADICKPITRKVTRPTLTLSQTQNATMNRISMKIPTSKRLLFNQHMRNNNSN
LPPMISIDFWENYDPAEVSRTGFGLILSEKTPIKSVCFLCGSYGTDPLIFCVCCCEPYHF
FCVENEFNVRFKTNSFLNTSSSQVNESTDDINLNISADDSGALVERGYDMPLSKRLNWLC
PRCTVCYTCNMSTGVKVKCWKCEKNYHTTCLGTSKRLLGADRPLICASCLKCKSCGTTNV
TKFIGNLAMCSNCFRLRRKGNYCPLCQKCYENNDYDVKMMECGDCKRWVHSKCEGLTDEQ
YNLLSVLPEHIEFICKKCSPNNSSSNIWRESVESEFKTSLLSVIKLLSKSRHACALLRLS
PRKKNSSCFCAASKNNINGNNSYPTNFNSLFDALKTEDSIDQNEPQKIQCTCFNNNSLQM
NTLKPNISSIKQSINDNKYHSLQAFNYDMNKILNDAQSEDLVIAYNEIISEIFPWYQNET
KACTDALEETMNDHSKSDLLDNLICENENSEYFMMTSFNVPENLIKNETDYMQTIFFNEK
DNRACMLCKKEGECSSEEEGRLLYCGHNTWVHTNCALWSAEVYEEIDGSLQNVHSAISRG
RLIKCSKCGIKGATVGCNFKNCGEQYHFQCARSICEFRTDKSVYCPLHLSKETDEEKPQL
ESNFQVNRSVYVELDRRKKKTVEASKVQFLIGSLYVTKLGRIVPILSDGGDYLIPIDFEC
TRLFWSSKHPWNIVEYKIKISIQRSNHHTMTIDKGINFTVDHTKSVQAIQKNLKQIALFH
SSIVKEQETMVQEETQDEEAPNQTNDLLPPEIKAAIFEDLPHDVLDGISMFDIFPNPADT
KTTFFNHVSDEDDESSKSNQVNGDGDVDSDFNGLLNSIQNEFSTEYSFSKRDESESKKRK
ISNATENNDSNNNPDSKEQEQKSTSSMTLQKYINQQNELKNNSKDFIDKIPQLDGLNDEI
LMQSDGPVACEKCRCTYRNRISYERHLATCDNIQNTSESDSEAPDGAQVYLSNATSQAIT
GIGGNNVISVINQQQNQSLATSIPIVINNPLTTQNGLAIANGVQIPNLQNLSLTLGNDGN
LCQNVIVDQQGQQIYTQPLQLGQFGQAATIMPIRNFNQANVINNGGISYLSNSTQQQPAQ
FIQLAPATNGTNTQQIMTITSQQDQEHQKTQKKPLLLPSPIKAKPSKAGNVIKNSSITTS
KKKLETLSTKSQQQQISVVNSKNVQIANFQSSISPRTNSTQSASTISQPTSAQNIIFQQP
AQQIAPQLNQYPLILNQNGQLVQYISTDAQNNQPIQYMQIGGTNTKDIKNGSQNFITNAQ
QTSTVASPQIFQNSFQMPANNSSNLVLTPNGLSVLPVVPQSPIVGTIIQQPQALQCVNGV
VSTEQMMLGSTPTAIEMDPSSGCMYLTSQPVYYGLETIVQNTVMSSQQFVSTAMQGICQN
SSFSATTTQVFQASKIEPIQMEIPAGYVFLNASDGSIHQSQIMDSSWNSIDEKKQTVEIS
GSYGNQKSQNVILKSNLSNQKTKVQAKVNKIQPQVVSKIMSPTSASINVSTSNINTTTVL
KTVNSDNSTKMHSQQQQNIQIVNQNAIIAKRQKATYRTIGPKIAQEEVVKTTSSAALIKP
KLKVQAKPIQQSNNYQSITLKPAGMNSSATPFMTDQPQLDSQPLQQQPQSHPQVQKITLD
QTYRNVQNNIIVGNTNSVKPKIDNPSTSTVQTTVINLPTNVVNPIQQQNSIFNNLNSKNQ
NSSVKPHFQNRPTNRVLPMPANAANVATVKCNSNINKIGSNIGKANNQNSSNNNLSCANT
GSNASLRNSSPSIIDNQNIGINNNVVTPTHNGESENYCEKIKSIAMELQSSNKADELFDA
LRRSTTINNVITISSSDNFVEKGDKKLKLSTPTSSPRSNDSYMIPSTSASSISSHPPKPV
ITKTASVCSLTKTIDSVATGANLLDDDQSQSVSPPIDLIPSSITITPIDPPLSMTPMEVE
KPIITEEEPMETVDKINIESIMFEEMPELKGSKDTMSSSSEIITAEDEVEDMKIQEKSTF
QTYDEETTSDRPSLSSIGSTYATKASREKTPTSTTSSKASGPKLLFEIQSQDGFTYKSTS
INEIWEKLFETVQLARKAHGLLPLPEGRLNEMTGEQMLGLKTNALKYLLEQLPGVEKCTK
YSPKYHRRNSSASSSSSASSFSSMNGNCSSMSGFYGSSSFSSNASNLSSNSSISASLTSL
NQYINESDEILYENIYGCARFEPFSTRSDYDMFSWLASRHRLAPMPVHLQSNNEEVILRR
GTGSNLPMAMKYRTLKETYKKSVGVYRSHIHGRGLFCTRDIEAGEMVIEYAGELIRSTLT
DKRERYYDSKGIGCYMFKIDENLVVDATMSGTAARFINHSCDPNCYSKVVDILGQKHIII
FALRRIVTGEELTYDYKFDIEDNKIPCCCGAKRCRKYMN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g10167.t1 CDD cd15506 PHD1_KMT2A_like 876 907 5.36303E-14
17 g10167.t1 CDD cd15489 PHD_SF 962 1009 0.00119279
19 g10167.t1 CDD cd15508 PHD3_KMT2A_like 1042 1098 1.83425E-31
18 g10167.t1 CDD cd19170 SET_KMT2A_2B 3068 3219 1.29312E-108
15 g10167.t1 Coils Coil Coil 741 761 -
14 g10167.t1 Coils Coil Coil 1709 1729 -
13 g10167.t1 Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain 1037 1101 5.1E-25
12 g10167.t1 Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain 1319 1431 2.5E-22
11 g10167.t1 Gene3D G3DSA:2.170.270.10 SET domain 3043 3219 3.2E-54
37 g10167.t1 MobiDBLite mobidb-lite consensus disorder prediction 42 88 -
43 g10167.t1 MobiDBLite mobidb-lite consensus disorder prediction 48 65 -
41 g10167.t1 MobiDBLite mobidb-lite consensus disorder prediction 66 80 -
40 g10167.t1 MobiDBLite mobidb-lite consensus disorder prediction 598 614 -
42 g10167.t1 MobiDBLite mobidb-lite consensus disorder prediction 598 656 -
36 g10167.t1 MobiDBLite mobidb-lite consensus disorder prediction 627 656 -
39 g10167.t1 MobiDBLite mobidb-lite consensus disorder prediction 1665 1707 -
38 g10167.t1 MobiDBLite mobidb-lite consensus disorder prediction 1666 1684 -
32 g10167.t1 MobiDBLite mobidb-lite consensus disorder prediction 1685 1707 -
34 g10167.t1 MobiDBLite mobidb-lite consensus disorder prediction 2667 2697 -
33 g10167.t1 MobiDBLite mobidb-lite consensus disorder prediction 2669 2697 -
31 g10167.t1 MobiDBLite mobidb-lite consensus disorder prediction 2819 2859 -
35 g10167.t1 MobiDBLite mobidb-lite consensus disorder prediction 2825 2859 -
7 g10167.t1 PANTHER PTHR45838 HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 33 2102 0.0
6 g10167.t1 PANTHER PTHR45838 HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 2107 3219 0.0
3 g10167.t1 Pfam PF00628 PHD-finger 1042 1100 5.0E-8
5 g10167.t1 Pfam PF13771 PHD-like zinc-binding domain 1352 1428 2.6E-8
2 g10167.t1 Pfam PF05964 F/Y-rich N-terminus 1472 1520 3.0E-10
1 g10167.t1 Pfam PF05965 F/Y rich C-terminus 2861 2946 4.7E-20
4 g10167.t1 Pfam PF00856 SET domain 3092 3196 2.4E-23
49 g10167.t1 ProSiteProfiles PS51030 Nuclear hormone receptors DNA-binding domain profile. 404 505 9.962
48 g10167.t1 ProSiteProfiles PS50016 Zinc finger PHD-type profile. 1040 1101 9.659
44 g10167.t1 ProSiteProfiles PS51805 Extended PHD (ePHD) domain profile. 1322 1429 26.032
47 g10167.t1 ProSiteProfiles PS51542 FYR domain FYRN motif profile. 1466 1523 20.939
45 g10167.t1 ProSiteProfiles PS51543 FYR domain FYRC motif profile. 2861 2945 26.836
46 g10167.t1 ProSiteProfiles PS50280 SET domain profile. 3081 3197 18.841
50 g10167.t1 ProSiteProfiles PS50868 Post-SET domain profile. 3203 3219 9.691
21 g10167.t1 SMART SM00249 PHD_3 876 964 5.7E-4
29 g10167.t1 SMART SM00184 ring_2 877 963 1.0
22 g10167.t1 SMART SM00249 PHD_3 965 1010 6.1E-4
30 g10167.t1 SMART SM00184 ring_2 966 1009 7.9
20 g10167.t1 SMART SM00249 PHD_3 1042 1099 3.3E-6
28 g10167.t1 SMART SM00184 ring_2 1325 1388 0.84
23 g10167.t1 SMART SM00249 PHD_3 1384 1429 7.7E-4
26 g10167.t1 SMART SM00541 fyrn_3 1479 1524 3.1E-4
25 g10167.t1 SMART SM00542 fyrc_3 2865 2951 1.6E-28
27 g10167.t1 SMART SM00317 set_7 3081 3203 1.4E-42
24 g10167.t1 SMART SM00508 PostSET_3 3203 3219 9.9E-4
9 g10167.t1 SUPERFAMILY SSF57903 FYVE/PHD zinc finger 957 1019 9.55E-7
10 g10167.t1 SUPERFAMILY SSF57903 FYVE/PHD zinc finger 1041 1103 1.2E-9
8 g10167.t1 SUPERFAMILY SSF82199 SET domain 3072 3216 5.49E-47

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005634 nucleus CC
GO:0005515 protein binding MF
GO:0006355 regulation of transcription, DNA-templated BP
GO:0043565 sequence-specific DNA binding MF
GO:0008270 zinc ion binding MF
GO:0003700 DNA-binding transcription factor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values