General information for g10167.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as histone-arginine N-methyltransferase.
Parent gene
- The parent gene g10167 is located on chr_1: 8023703..8024892 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10167 | g10167.t2 | isoform | g10167.t2 | 8019441 | 8020313 |
| chr_1 | g10167 | g10167.t2 | exon | g10167.t2.exon1 | 8019441 | 8020313 |
| chr_1 | g10167 | g10167.t2 | cds | g10167.t2.CDS1 | 8019443 | 8019886 |
| chr_1 | g10167 | g10167.t2 | TTS | g10167.t2 | 8019447 | 8019447 |
| chr_1 | g10167 | g10167.t2 | TSS | g10167.t2 | NA | NA |
Sequences
>g10167.t2 Gene=g10167 Length=873
ATGTGGCATCAAGGGAGCTACGGTCGGCTGTAATTTTAAAAATTGTGGTGAACAATATCA
TTTTCAATGTGCTCGCTCAATATGTGAATTTAGGACTGATAAGAGTGTCTATTGTCCATT
GCATCTTTCAAAAGAGACTGATGAAGAAAAACCACAACTCGAATCTAATTTCCAAGTCAA
TCGATCTGTTTATGTCGAATTGGATCGAAGGAAAAAGAAAACTGTAGAAGCATCAAAAGT
TCAATTTCTTATTGGATCTCTATACGTCACAAAATTAGGTAGAATAGTTCCGATATTAAG
TGACGGCGGAGATTATTTGATTCCAATTGATTTTGAATGCACGCGTTTGTTTTGGTCATC
AAAACATCCATGGAATATTGTTGAGTACAAAATTAAAATCTCAATTCAGCGTTCGAATCA
TCACACGATGACAATTGATAAAGGAATAAATTTTACTGTTGATCACACTAAGAGTGTTCA
GGCTATTCAAAAGAATTTGAAACAAATTGCATTATTTCATAGTTCAATTGTCAAGGAACA
AGAGACAATGGTTCAAGAAGAAACACAAGATGAAGAAGCACCAAATCAAACTAATGATTT
GCTTCCACCAGAAATTAAAGCAGCTATTTTTGAGGATTTACCACATGATGTTCTCGATGG
TATTTCAATGTTTGACATTTTTCCAAATCCTGCTGATACAAAAACAACATTTTTCAATCA
TGTGTCAGATGAGGATGATGAAAGTAGCAAGAGTAATCAAGTAAATGGAGATGGTGATGT
TGATAGTGATTTTAATGGATTGCTAAACTCAATTCAAAATGAATTTTCTACTGAATACTC
GTTTAGTAAGCGTGATGAGTCAGAATCAAAAAA
>g10167.t2 Gene=g10167 Length=148
MTIDKGINFTVDHTKSVQAIQKNLKQIALFHSSIVKEQETMVQEETQDEEAPNQTNDLLP
PEIKAAIFEDLPHDVLDGISMFDIFPNPADTKTTFFNHVSDEDDESSKSNQVNGDGDVDS
DFNGLLNSIQNEFSTEYSFSKRDESESK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g10167.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 125 | - |
| 3 | g10167.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 110 | - |
| 1 | g10167.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 125 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed