Gene loci information

Transcript annotation

  • This transcript has been annotated as histone-arginine N-methyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10167 g10167.t4 isoform g10167.t4 8022182 8024892
chr_1 g10167 g10167.t4 exon g10167.t4.exon1 8022182 8023107
chr_1 g10167 g10167.t4 cds g10167.t4.CDS1 8022182 8023107
chr_1 g10167 g10167.t4 exon g10167.t4.exon2 8023167 8023640
chr_1 g10167 g10167.t4 cds g10167.t4.CDS2 8023167 8023640
chr_1 g10167 g10167.t4 exon g10167.t4.exon3 8023703 8024438
chr_1 g10167 g10167.t4 cds g10167.t4.CDS3 8023703 8024438
chr_1 g10167 g10167.t4 exon g10167.t4.exon4 8024737 8024892
chr_1 g10167 g10167.t4 cds g10167.t4.CDS4 8024737 8024892
chr_1 g10167 g10167.t4 TSS g10167.t4 8024945 8024945
chr_1 g10167 g10167.t4 TTS g10167.t4 NA NA

Sequences

>g10167.t4 Gene=g10167 Length=2292
ATGTTCAATAAAACGAAATTTCCAGGAAAGCCATCCAAAGTAGTGAATAAGAAGCGTGTT
AGTGTTTTATCGTTCGATAATAATTTTGACAAAAGAGCAAACGATCGTTGTGAAATTGAC
AGTGAAAAAAATTTGGCATCAAAACATGGCTACCAGACGGAAAGTGCAACAACAACAACG
GCAACTGCAAAACAGTCAGCGGAGGAGAGCGAAGAAAAGTCGAAACCAGTTATGACAACT
GAAGAGACAGAAAATAAAAATTTAACAACATCAGTAGCCGCGAACGAAGAAAAAATGGAA
ACAAATAAGGAGACAAAAAATATTAAAAATGATACAAATTGTGATAATTTAGATAAAAAG
ACGAAAAATTTAAAGAAGCATGTGACATTTCGACAAACGGTAGAGACGAGTGATCAGTGT
AAAGTGAAGCGTGTCTATAATCCGAATTTCAACGGACCTATTGTTTCAATTATTAAAAAA
GAGTCTCTTAAATATCCAATTTTGGTGTATAAAACCAATTGCATTGTTCGACCGTCAAAA
TTGACAGAAATTGTGAGGAATAGTGCGAACAATATTGATAAATTAAATTCACTTAGATTT
GGGCGCGAATATGCTAATCAACATTCACAACATACATCTGATGGTACCAATAAATCATTA
TCATCTGCTTCATCGTCATCATCAAATGTCATTGTTGCCAGTAAATTTAATCTCCCCAAA
TTGAGTGCAAACTCATCGCGAGTAATTAAACCCAACAAAAGATTACTCTTTGATTCGGGC
GAGGATACTTCGTTAGCTAGTAAGAAGAAAGTCATTAAACCCAGTTTTTGGGGTGAGGGA
GGAAGTGAACAAAGTTCGAGTTCTTCACTTTTGAAAGAGAAGAAAAATTTCGGCTTTAAT
TTTGTCGATGAATTAGATCTGAAGTCAAAGAAATCAAAAGTTTCAACATCATTAGCATCA
ACATTACCTTCAGCTACAACTTCTACACTTACGACAGTCACTGAAAGTACAAGTAAAGCT
GATGACAGTTCTAATAAACTCCTCCTATCACAATCAATTCTAAGGAAGCCAGTGCTTCAG
CTCTCTACGAATTTTAGTCTATTTGGATCGCAAGAACGTGATTCGAGTGCACTTAAAAGT
CCATTTTCTCTTAAACTCGATTCATCAAATAATACATCACCTTCCACATCGACAGCGATT
TTTACAAAATCTTTGGTGTGTAATGTATGTAACTCCATAACAACTCGTAAACAACCGCGA
AAGTATGGAGCAATATGCTGTGAAATTTGCAAAAAATTTATGTCAAAAATAATTGAGCGC
GTAAACAAGCATCCTGTACAAAATTGGCAGTGCGATAAAGGAGACGGTTCATGTACGATA
GAGTCAGTAGCATTAAAGAATACAAAACCATCAAAACTTGATATTAATATGAAAATTATT
AGCAAAGGACGATGTTATGCATGTTGGCTTAAAAAATGTTTACTTACTTTTCAATTACCA
TCTCCACTCAAAGCGCGTTTAACAAACGTTCTGCCGAAGAGTTTGATGGAGCCTTCAAAA
TCAGTGGTCTTATCAAACACAAACAACACAAACTCGGATAACTCAAATATATTTTTAAAT
TCACTCAAGTCATTTTCTTCATTCAAATTGTCATCAAATCCTTTGGCCATAAATAATTTT
ACATTTGGTTCAAAGCCTGATATTAAATCTAGTTTTGACAATGTATTGAAGAATGCATTT
ACGAGTGATAAGCCTTTATTGGTTGATATACCAAAGGAAGCGGCAGCATCAACATCTTCA
TCAACTCCACTATTATCAACAAGTGAGACTAAAAAGTCACCAAAATCTCCAAAGGGATCT
CCTAAAGTAGTTTCACCTAAAGTGGCATCAATATCACCTTCAACATCACAACAGCAGCTA
ACAAATTCATCACAAAATCAAATTATTCATCCATCAAATGTTGCAACATCTGATAGTCTA
AGACAGAGGAATTTAATTAAAGGTCCTCGTGTGAAACATGTTTGTCGGTCTGCTTCTCTT
GTGCTTGGTTTACCGATTGCCGTTTTCCCTGGTGATTCTGAATCTCAGAATGCAGAAGAA
AATGCTGCAACAGAGACAATTGTGACTGATGATCAAATGTTGAATGAGAATTCAGAAAAG
GAAAATGTTGCATTTACAGCGATAGAAACAAAAGCTGAAGAACTTATTGAACCGAATAAA
GAAAAAGAATTATCACAGAAGAATGAAGAAACAAATATTGTCGTTGAAAAAGTTGAAGAA
GCAGAAATAAAT

>g10167.t4 Gene=g10167 Length=764
MFNKTKFPGKPSKVVNKKRVSVLSFDNNFDKRANDRCEIDSEKNLASKHGYQTESATTTT
ATAKQSAEESEEKSKPVMTTEETENKNLTTSVAANEEKMETNKETKNIKNDTNCDNLDKK
TKNLKKHVTFRQTVETSDQCKVKRVYNPNFNGPIVSIIKKESLKYPILVYKTNCIVRPSK
LTEIVRNSANNIDKLNSLRFGREYANQHSQHTSDGTNKSLSSASSSSSNVIVASKFNLPK
LSANSSRVIKPNKRLLFDSGEDTSLASKKKVIKPSFWGEGGSEQSSSSSLLKEKKNFGFN
FVDELDLKSKKSKVSTSLASTLPSATTSTLTTVTESTSKADDSSNKLLLSQSILRKPVLQ
LSTNFSLFGSQERDSSALKSPFSLKLDSSNNTSPSTSTAIFTKSLVCNVCNSITTRKQPR
KYGAICCEICKKFMSKIIERVNKHPVQNWQCDKGDGSCTIESVALKNTKPSKLDINMKII
SKGRCYACWLKKCLLTFQLPSPLKARLTNVLPKSLMEPSKSVVLSNTNNTNSDNSNIFLN
SLKSFSSFKLSSNPLAINNFTFGSKPDIKSSFDNVLKNAFTSDKPLLVDIPKEAAASTSS
STPLLSTSETKKSPKSPKGSPKVVSPKVASISPSTSQQQLTNSSQNQIIHPSNVATSDSL
RQRNLIKGPRVKHVCRSASLVLGLPIAVFPGDSESQNAEENAATETIVTDDQMLNENSEK
ENVAFTAIETKAEELIEPNKEKELSQKNEETNIVVEKVEEAEIN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g10167.t4 Coils Coil Coil 741 761 -
7 g10167.t4 Gene3D G3DSA:3.30.50.10 - 399 506 2.9E-5
1 g10167.t4 MobiDBLite mobidb-lite consensus disorder prediction 44 88 -
5 g10167.t4 MobiDBLite mobidb-lite consensus disorder prediction 48 65 -
4 g10167.t4 MobiDBLite mobidb-lite consensus disorder prediction 66 80 -
2 g10167.t4 MobiDBLite mobidb-lite consensus disorder prediction 598 614 -
6 g10167.t4 MobiDBLite mobidb-lite consensus disorder prediction 598 646 -
3 g10167.t4 MobiDBLite mobidb-lite consensus disorder prediction 627 646 -
9 g10167.t4 ProSiteProfiles PS51030 Nuclear hormone receptors DNA-binding domain profile. 404 505 9.962

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006355 regulation of transcription, DNA-templated BP
GO:0043565 sequence-specific DNA binding MF
GO:0008270 zinc ion binding MF
GO:0003700 DNA-binding transcription factor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed