General information for g10175.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative transcription factor capicua.
Parent gene
- The parent gene g10175 is located on chr_1: 8068391..8074608 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10175 | g10175.t1 | isoform | g10175.t1 | 8063156 | 8074608 |
| chr_1 | g10175 | g10175.t1 | exon | g10175.t1.exon1 | 8063156 | 8063368 |
| chr_1 | g10175 | g10175.t1 | cds | g10175.t1.CDS1 | 8063156 | 8063368 |
| chr_1 | g10175 | g10175.t1 | exon | g10175.t1.exon2 | 8066302 | 8066882 |
| chr_1 | g10175 | g10175.t1 | cds | g10175.t1.CDS2 | 8066302 | 8066882 |
| chr_1 | g10175 | g10175.t1 | exon | g10175.t1.exon3 | 8066940 | 8067252 |
| chr_1 | g10175 | g10175.t1 | cds | g10175.t1.CDS3 | 8066940 | 8067252 |
| chr_1 | g10175 | g10175.t1 | exon | g10175.t1.exon4 | 8067568 | 8068391 |
| chr_1 | g10175 | g10175.t1 | cds | g10175.t1.CDS4 | 8067568 | 8068391 |
| chr_1 | g10175 | g10175.t1 | exon | g10175.t1.exon5 | 8068456 | 8068790 |
| chr_1 | g10175 | g10175.t1 | cds | g10175.t1.CDS5 | 8068456 | 8068790 |
| chr_1 | g10175 | g10175.t1 | exon | g10175.t1.exon6 | 8069873 | 8070700 |
| chr_1 | g10175 | g10175.t1 | cds | g10175.t1.CDS6 | 8069873 | 8070700 |
| chr_1 | g10175 | g10175.t1 | exon | g10175.t1.exon7 | 8070763 | 8071556 |
| chr_1 | g10175 | g10175.t1 | cds | g10175.t1.CDS7 | 8070763 | 8071556 |
| chr_1 | g10175 | g10175.t1 | exon | g10175.t1.exon8 | 8071643 | 8071805 |
| chr_1 | g10175 | g10175.t1 | cds | g10175.t1.CDS8 | 8071643 | 8071805 |
| chr_1 | g10175 | g10175.t1 | exon | g10175.t1.exon9 | 8071863 | 8072971 |
| chr_1 | g10175 | g10175.t1 | cds | g10175.t1.CDS9 | 8071863 | 8072971 |
| chr_1 | g10175 | g10175.t1 | exon | g10175.t1.exon10 | 8073038 | 8073374 |
| chr_1 | g10175 | g10175.t1 | cds | g10175.t1.CDS10 | 8073038 | 8073374 |
| chr_1 | g10175 | g10175.t1 | exon | g10175.t1.exon11 | 8073434 | 8073617 |
| chr_1 | g10175 | g10175.t1 | cds | g10175.t1.CDS11 | 8073434 | 8073617 |
| chr_1 | g10175 | g10175.t1 | exon | g10175.t1.exon12 | 8073679 | 8073872 |
| chr_1 | g10175 | g10175.t1 | cds | g10175.t1.CDS12 | 8073679 | 8073872 |
| chr_1 | g10175 | g10175.t1 | exon | g10175.t1.exon13 | 8073926 | 8074039 |
| chr_1 | g10175 | g10175.t1 | cds | g10175.t1.CDS13 | 8073926 | 8074039 |
| chr_1 | g10175 | g10175.t1 | exon | g10175.t1.exon14 | 8074096 | 8074289 |
| chr_1 | g10175 | g10175.t1 | cds | g10175.t1.CDS14 | 8074096 | 8074289 |
| chr_1 | g10175 | g10175.t1 | exon | g10175.t1.exon15 | 8074352 | 8074487 |
| chr_1 | g10175 | g10175.t1 | cds | g10175.t1.CDS15 | 8074352 | 8074487 |
| chr_1 | g10175 | g10175.t1 | exon | g10175.t1.exon16 | 8074556 | 8074608 |
| chr_1 | g10175 | g10175.t1 | cds | g10175.t1.CDS16 | 8074556 | 8074608 |
| chr_1 | g10175 | g10175.t1 | TSS | g10175.t1 | NA | NA |
| chr_1 | g10175 | g10175.t1 | TTS | g10175.t1 | NA | NA |
Sequences
>g10175.t1 Gene=g10175 Length=6372
ATGCATGTAACAGCAGCACAGTCAACGAATTTAGAATCTGTACCTGTAAATCAACAACAA
CAACAATCATCAATCGTGGAATCACATACTACTACTACTACTCTTACGGAATCTAGTAGC
AATTCAAATAATAATAATAATAGTAAAAATAATAATAAAAAGACAACATTATCAACTGGT
AAAAAGCAAGAACATGGAAACTTGGACGATGAGATACCAGCATCGGTAATAAGTAGTATT
GGAACAACAACAACAAATTATCAACAGCATTATATTGTTGTGACTAATCCATCGTATTCT
TCAAGTGAAACATTCACGCCATCAACGGAGACAGTTGCCAATAGTTCGAATGCAAGTTTG
TCATATGTGGATGAGAATGTAAATAGCAAAGCCATGATTCAACAAACCGTTAATGTGCAG
GCTGCACCACGTCTCCATCCAAAAAAGAGAAAATTTGATTTATCCGAGTTGGAAGATGAT
CATCCACCACCAGCATCTTCTATTTCCTCATCCACATCTACAGCTTCGTCTTCTACGTCA
AATGCCTACACTATAGCAACAGCATCATCATCAGCAGTCACTTCAACTCAATTGCCTCCC
ACATCAACGACAGTTGTATATCATAGATTACCCGCATCTGATCCTAATCATAATGTGAAT
TCACAGCAGTTTACGCACTATATACCAACACACCATAGTAGTGGTAGTAGCAATCCTCAA
AATGTTGTGACACAGGTTGTAAAAAACACGGGCGAAGCTCAACAATTTATTAAACGACAT
ATGACGAGCTATAGTCCAACTACTTCAAATCATATGAAAGCAATAGTAACATCTAGTCAA
GTTGTGACAGCATATCAACCGTCAATTGAGCAGCAACAGCAGCAGGCACAACAAGACTCA
CTAGTAGATCTCAAAGAATGGTGTAATCAAAGAGTTTTAGCAAAACGAAAAGACTATTAT
GTTCCAGGTGTAACGAGACCAACTCACTATCCCAATAGTGTACTCGTAGAACTCGATTTT
CCTGAAGGTCAGCAGCAATTGTATCAAGATATTTTTGCCACTGGCAAGTTTGATGTGATC
GGTGATGCTCCACCAACATTAAATGAAATATACGTTGGACGACGCATTTGTGTTCGCGCT
TCAATTTCTGATCTCCCAACGCATGTTTTCATTGAAGGTCAAGTAATTGAGATCATAAAC
ATCCCGACTAAGCAATTTACTATACAGACATTTAGTGGCGAAAAGAAAATTGTCAAAAGA
GCTGAACTTCGACTCATTTTGCCACCTTGGTGGGAAGAAATAAGCGAACAGCATGAAACG
ACATCATCATCTGTTGTAAAAGTTACTCAAATGGGTAGCATTGTCAAGGGTGAACCGCAG
GGTCAACGTGTCATATTAATAAATAAACCTATTGATCATTCTTCAATGGATACAAGTGGA
GTGCCGAATATTATTTACGGAGCTGCCAGTAGTAACAGTAGCATAATAAAGTCAAATCAC
AGCAACACAACTCGAGCTTATGTTCAACAAAGATATGAAGCTCCGTCTATTCAGCTTCAA
CAAGTTGTGCCTACATTGCAAGCACATAATGAAGACTATTATCGAACAACTGCCACTTCT
CCTTTTCAATCGTCATCATCAGGACAGATTCATGAAAATGCTATAACAGAACTGCCCCAT
GGACAAAACATGACAATTGTATCAGCCAGTCCACTCAATGAAGATGCCTATAGAAGACAT
TCGTCAACTAGACAATATGACGATTATGAAAGTGATGATGATCTTCGCCGTGAAGATATT
TCATTTACAATGGATGGCGAAGAAAAGTATTCTGGAAGCAGCAAACGAAGTAGTATGCAA
AGTAGAGGAAGTACATCAAGTCTCATTGAGCATGGAAGCTTAACACCACGATCTCAACCA
GCAACTCCACGATCTCAAGCGGCAACACCGCATCGTTTCAAAAAGGGAGACGTTGTCTCG
ACACCAAATGGCATAAGAAAAAAGTTCAATGGCAAGCAATGGCGTCGACTTTGCTCTAAT
GAGACATGCACTAAAGAATCCCAACGACGTGGATTCTGTTCACGTCATCTCAGTCAAAAA
GGCAATGCATTGCGTTCATCAACTGGACCGTCACATTTTTCAGCAAGTCGTTCGAGTAGT
AAAACACAAGCAGATGAAGATACAAGCCGTGATTCAGAAACGTCTCCTAATTATCGCGTC
GCAGGCAAATTTGATCAAGATGAAACAGATGTAGCCAATATGTTAGTATCGTTAAGCAGT
TCACGATCAGCTACACCAGCTTTTTCATCACCAACCGGTCATGGATCATCTCCTGTCATT
AATCAGTCTCCAATTGCAACAACAGTTGGAAATAGACAGAATGTATTTATGCCAATTGGT
GGAGGTGATATTGCTTCACATAGTGAAAATAGCTCAAAATACAAGAACAGTACGTCCAGT
CCAATTGTTGGTATATCACTTGCTCAAGTAATTCGTCCAGAACTGGTAAGACCGACACAA
ACGCAACAGCAACAACATCATGTTGTCAACATTCAAAAGACACAATTACAAACTTCATCA
AATGTGTCGCAAGCTGCTAATCCTGTTGCAATCATTTCTCAGCAACAACAGCAGCAACCA
TCTCTTCCACCACCTGTATCAATGCAACAACAGCAGCAGCAGCAAAGTGGAACGATAGGA
CATGCAACAAGTGTTATTAGAATTTCACCAGCTTCGGGAAATCAATTTCAGCCATTCCAT
CCAGTTATTGTTGATCCAACACATTTAGTACCATTGCTACCACCATCAACTTCTTCTACA
GCAATGAGCATAAGTAATGGTACAACTGGAACAAATGCGTCAAATTCAAATCAAATTGAA
CAAAAGCCGGTTCAAAAAAACGGAATTAACACGGGTTCTATTTATCAATGGCATACACTG
TTGCCGGTGATAAATACAGCACCACCGCCAGCAACAGCCGATAATCATCATAATACAACA
CAATCACAACATGGTAATGATCCATCAAGTGGACCAGCAGTGATTGTAAATGATGATGCG
GACATGAGTGGAGAAGATGATGATGTCTTTGAAGAGCCCGTGCCACCGACAAAAAATTCA
CAACAACATTCATCCGGTAATGGAATCAATCACAATCATGGACAACAACAGCAGCAGAGA
TCGGTTATATTTCAAAGCGGCATAGGTGGTGCTGACGATCAATGCTCTGATAATAAAACA
GATAATGACGCAATTCCGACAAATACAAAAAAGGGAAGATCACAATCATTGAGTGCATTG
CATGCAGGTAAAGATCCTTCGAGTCCAAGTTGCAAAAAAGATCCAAGAATTCGTCGTCCA
ATGAATGCATTCATGATTTTTTCAAAACGCCATCGAGCAATGGTTCATCAACAACATCCA
AATCAAGATAATCGTACTGTAAGTAAAATTCTCGGTGAATGGTGGTATGCACTTAAATCA
GATGAAAAGACAAAATACCATGAGCTTGCGAGTGAAGTAAAAGAAGCACATTTCAAAGCA
CATCCTGAATGGAAATGGTGCTCGAAAGATCGTCGAAAATCTTCAAGTTCAACAAAAGAT
TCACGTGGTCGTATGGATTCATTTGATGGAGCTGATTCATATTCAGATGAAAAGAGTCCA
AAAACACCAGCTGATCATCTTCAGCAACATCAGACATCAGATGTAATTCCATTAACAATA
AATAATTATGAAATGGATGTTAATGAAAATAAAAATGATGAAGGAAAGACAAATGAAGAA
AATAATGAACAACAACAGCAGCAACATGAAGCTATGGAAATTGACTTAAAATGTGCTGAA
AAAGTAACAGATTCTGATGTTGAATCGAATGCTGAAGATAGAGAAAAAGGCATTTATCAA
AAAGATCACATGTATGGTGGTGATATGACACGAAAGCCAAAGCCAATCAATCCATTGCAT
CAAAATGAAACATCATTGTATTCTCCAATGCCAATTTATCCTTATAATAGTCCTAAAAAT
CCTGTTGGTGTTATGCCATTCCAACCGAAAGGTGGTGCATTCCGTTCAATGCCACAGAGT
CCAAAGACATGCGGAATAATTCAAAGCAGCACACCAACAATAAAGGCTGAATTGGATGCA
AAATGTTTATCTGCTAACAGTACGAATAACAACAACACAATATTCAATTTCCCATCAGTG
CAATCGAGCAACAGTAGTACAGGAAAAGCTGAAAACGATGGTGCATTGAGAAAGGGTGAT
CAAGTTTCAAATGGCGGCGGCAGCAGTGCTGGTAACACATTATCGAAACAACATGAAGGT
AAAAATATGGATGTAACCGTAACCGAGAATATAGATGTTAATGTGAATGTTGTTGCATCA
TCAATAAATCATACAAAAATTTCAACTTCTTGCTGTCCCTCTATGTCATCATCCTCATCT
ACTAATATTAATAATAACTCTACTAACATTCAATCATCATCAAATAACTCTGCTACTACT
ACTACTTCTAATAATTATAATAATAATATAAATGTTATCAGTGTATGTGATAATAGTGAT
AATAATAATAGAACTAACGGAAATGGTATTATAATCACAGAAACGCACGATAGTGCGAGT
TATTATGATACCATAAAATTGGAAGAAAATGGCACAACTGCAATTATTTATGAAACTATT
GTGATTGAGAATCCATCAGTGACAACGACATCGACGACACAGCATGGTCAAGAGATTGTG
GGTTATGTCTCGAACAGCAATAATATTAATAACAATAATAATAAGTATATTACTAACAAA
AATCATATGACCACAATCCTTGATTCTTCCACATCAATTTCCAATAATATAATTAATGGT
GGTGGGGTTACCAGTAGTGGTGGTAGTGGTGGAATAATTGTTCTAACTGGATCGTTAAAT
GATTTGTTGTTAAATCAAAATGGTCATATGATAACTAACACACAGCTACTTTGTCAGAAC
CAAATCAGTGGTAATGGCAGCAGTAACATTAAATGTTTGAGTGATGTTAAGAATCAAATT
CAATCAATTGTATTAAATTTAAATTCACAATCATCAGCACCTACGACAGATGCCTCTGGA
CAGATGACTCTTGGCAATCAGCAGCAATCGATTATGTTGGCCATTAATTCAAATCAACAG
GATGAGTACGTTATGTATCAAAAACCACATCAAACAACTATGAAACAACCATCAGCTTAT
GTTATTCAGAGTTCAAAAGTTCCAACTGTATATGTTCAGCAAACTTTTGATTCAACAGCT
CATTCACTCAAGATTAAAGATGAACCTGAATCGCCTACAGTTCGCAATAATCTGCCTGCT
ACACCAAAATCAAATGAGGCACAATCTAATGATACCGATGGAAATGAGCATTGTGAAACG
GATGAAAATTATTCATCTGAAAATAAGCAGCAATTTATTCTGGCACCGACACCTGCTCAA
TTAGGAAAAGCTCCATTACAGAGACGTCAAAATCAGATAGTAAATACATCGCACTCAAAT
GTCTCAGAAATGACAACATTTATCGATACTAACGCATCATTAAATGTTGTCCCTTCAGCT
CTGCCTACGCCCACTTCAGCTCCTTACGATGATCAAGCTCAAATGTCGCCATCAGTCAAA
AATAAATCTTATAAAAAGATTAAAACAGATAATATGGATAATGTCTTGAGACAGGTCGAT
TTTGAGAAGAAATTTTTAATTCTTCCACAATTTAAGCCAGAAGATTGTCAATCTCCTAGC
GCAATTTCAGTGCCATCTTCACCAAGAGTATTTACGCAAAGCTATCGAAAAAAGCAAAAT
CAGCAGCAACAACAGCAGCAGCAGCCTCCACAACAGTCAATCCCAAAAAGTGCAGTTCAA
ACAGATGATGAACAATCAGATCTCGGAAGCGCAATCTCTTCAGCAACACCATCGTTTCTT
ATGGGAAATCGATTCTTTGGTCCAGATTTTAATATTGATCAATTAAGATACTGCGTAAAT
GCAGTATTAGCAGCTGAAGATAATTCAGATCGATCACCTAGAACACCAAAAACACCTTCA
CAAAGATCTGATGCTAACGAAAAAGGCCATAGAAAAATATTAGAAGAACGAAGACGACTT
GTAATGGAGTTATTTCAACAACATGGAATGTTTCCTTCATCACAAGCTACCAACACATTT
CAGATTGAACATAGCAATATATTTCCAAATAAACAAAGTCTTCAACTGAAAATTCGTGAA
GTACGACAAAAGTATATGGCTCAACCTGGCTTCAATACACAACAACCATATACCCCAAAT
GAAGCTTTTCAAAATAACACGTCTTCTGCAGAACAGCAGTCACAAACAACAGGAGTTACA
GCGGCACAGTGA
>g10175.t1 Gene=g10175 Length=2123
MHVTAAQSTNLESVPVNQQQQQSSIVESHTTTTTLTESSSNSNNNNNSKNNNKKTTLSTG
KKQEHGNLDDEIPASVISSIGTTTTNYQQHYIVVTNPSYSSSETFTPSTETVANSSNASL
SYVDENVNSKAMIQQTVNVQAAPRLHPKKRKFDLSELEDDHPPPASSISSSTSTASSSTS
NAYTIATASSSAVTSTQLPPTSTTVVYHRLPASDPNHNVNSQQFTHYIPTHHSSGSSNPQ
NVVTQVVKNTGEAQQFIKRHMTSYSPTTSNHMKAIVTSSQVVTAYQPSIEQQQQQAQQDS
LVDLKEWCNQRVLAKRKDYYVPGVTRPTHYPNSVLVELDFPEGQQQLYQDIFATGKFDVI
GDAPPTLNEIYVGRRICVRASISDLPTHVFIEGQVIEIINIPTKQFTIQTFSGEKKIVKR
AELRLILPPWWEEISEQHETTSSSVVKVTQMGSIVKGEPQGQRVILINKPIDHSSMDTSG
VPNIIYGAASSNSSIIKSNHSNTTRAYVQQRYEAPSIQLQQVVPTLQAHNEDYYRTTATS
PFQSSSSGQIHENAITELPHGQNMTIVSASPLNEDAYRRHSSTRQYDDYESDDDLRREDI
SFTMDGEEKYSGSSKRSSMQSRGSTSSLIEHGSLTPRSQPATPRSQAATPHRFKKGDVVS
TPNGIRKKFNGKQWRRLCSNETCTKESQRRGFCSRHLSQKGNALRSSTGPSHFSASRSSS
KTQADEDTSRDSETSPNYRVAGKFDQDETDVANMLVSLSSSRSATPAFSSPTGHGSSPVI
NQSPIATTVGNRQNVFMPIGGGDIASHSENSSKYKNSTSSPIVGISLAQVIRPELVRPTQ
TQQQQHHVVNIQKTQLQTSSNVSQAANPVAIISQQQQQQPSLPPPVSMQQQQQQQSGTIG
HATSVIRISPASGNQFQPFHPVIVDPTHLVPLLPPSTSSTAMSISNGTTGTNASNSNQIE
QKPVQKNGINTGSIYQWHTLLPVINTAPPPATADNHHNTTQSQHGNDPSSGPAVIVNDDA
DMSGEDDDVFEEPVPPTKNSQQHSSGNGINHNHGQQQQQRSVIFQSGIGGADDQCSDNKT
DNDAIPTNTKKGRSQSLSALHAGKDPSSPSCKKDPRIRRPMNAFMIFSKRHRAMVHQQHP
NQDNRTVSKILGEWWYALKSDEKTKYHELASEVKEAHFKAHPEWKWCSKDRRKSSSSTKD
SRGRMDSFDGADSYSDEKSPKTPADHLQQHQTSDVIPLTINNYEMDVNENKNDEGKTNEE
NNEQQQQQHEAMEIDLKCAEKVTDSDVESNAEDREKGIYQKDHMYGGDMTRKPKPINPLH
QNETSLYSPMPIYPYNSPKNPVGVMPFQPKGGAFRSMPQSPKTCGIIQSSTPTIKAELDA
KCLSANSTNNNNTIFNFPSVQSSNSSTGKAENDGALRKGDQVSNGGGSSAGNTLSKQHEG
KNMDVTVTENIDVNVNVVASSINHTKISTSCCPSMSSSSSTNINNNSTNIQSSSNNSATT
TTSNNYNNNINVISVCDNSDNNNRTNGNGIIITETHDSASYYDTIKLEENGTTAIIYETI
VIENPSVTTTSTTQHGQEIVGYVSNSNNINNNNNKYITNKNHMTTILDSSTSISNNIING
GGVTSSGGSGGIIVLTGSLNDLLLNQNGHMITNTQLLCQNQISGNGSSNIKCLSDVKNQI
QSIVLNLNSQSSAPTTDASGQMTLGNQQQSIMLAINSNQQDEYVMYQKPHQTTMKQPSAY
VIQSSKVPTVYVQQTFDSTAHSLKIKDEPESPTVRNNLPATPKSNEAQSNDTDGNEHCET
DENYSSENKQQFILAPTPAQLGKAPLQRRQNQIVNTSHSNVSEMTTFIDTNASLNVVPSA
LPTPTSAPYDDQAQMSPSVKNKSYKKIKTDNMDNVLRQVDFEKKFLILPQFKPEDCQSPS
AISVPSSPRVFTQSYRKKQNQQQQQQQQPPQQSIPKSAVQTDDEQSDLGSAISSATPSFL
MGNRFFGPDFNIDQLRYCVNAVLAAEDNSDRSPRTPKTPSQRSDANEKGHRKILEERRRL
VMELFQQHGMFPSSQATNTFQIEHSNIFPNKQSLQLKIREVRQKYMAQPGFNTQQPYTPN
EAFQNNTSSAEQQSQTTGVTAAQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g10175.t1 | CDD | cd01388 | SOX-TCF_HMG-box | 1116 | 1187 | 2.06972E-42 |
| 7 | g10175.t1 | Coils | Coil | Coil | 1248 | 1282 | - |
| 6 | g10175.t1 | Gene3D | G3DSA:1.10.30.10 | DNA Binding (I) | 1102 | 1185 | 4.9E-21 |
| 12 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 72 | - |
| 26 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - |
| 19 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 177 | - |
| 21 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 666 | - |
| 30 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 577 | 612 | - |
| 14 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 646 | - |
| 16 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 746 | - |
| 29 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 699 | 722 | - |
| 22 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 900 | - |
| 28 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1026 | 1118 | - |
| 31 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1035 | 1103 | - |
| 18 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1188 | 1237 | - |
| 24 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1188 | 1224 | - |
| 27 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1251 | 1271 | - |
| 17 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1398 | 1440 | - |
| 20 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1422 | 1440 | - |
| 13 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1762 | 1807 | - |
| 10 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1774 | 1789 | - |
| 25 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1790 | 1804 | - |
| 23 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1863 | 1882 | - |
| 15 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1917 | 1969 | - |
| 32 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2007 | 2030 | - |
| 11 | g10175.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2091 | 2123 | - |
| 4 | g10175.t1 | PANTHER | PTHR13059 | HMG-BOX TRANSCRIPTION FACTOR BBX | 612 | 750 | 1.5E-165 |
| 3 | g10175.t1 | PANTHER | PTHR13059 | HMG-BOX TRANSCRIPTION FACTOR BBX | 990 | 2113 | 1.5E-165 |
| 1 | g10175.t1 | Pfam | PF16090 | Domain of unknown function (DUF4819) | 357 | 436 | 7.6E-18 |
| 2 | g10175.t1 | Pfam | PF00505 | HMG (high mobility group) box | 1118 | 1185 | 1.7E-17 |
| 33 | g10175.t1 | ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 1117 | 1185 | 17.311 |
| 9 | g10175.t1 | SMART | SM00398 | hmgende2 | 1116 | 1186 | 9.4E-19 |
| 5 | g10175.t1 | SUPERFAMILY | SSF47095 | HMG-box | 1108 | 1187 | 3.93E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K20225 (capicua transcriptional repressor)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
