General information for g10182.t22
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Pre-mRNA-splicing factor 38B.
Parent gene
- The parent gene g10182 is located on chr_1: 8139342..8139870 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10182 | g10182.t22 | TSS | g10182.t22 | 8138158 | 8138158 |
| chr_1 | g10182 | g10182.t22 | isoform | g10182.t22 | 8139156 | 8139870 |
| chr_1 | g10182 | g10182.t22 | exon | g10182.t22.exon1 | 8139156 | 8139259 |
| chr_1 | g10182 | g10182.t22 | cds | g10182.t22.CDS1 | 8139258 | 8139259 |
| chr_1 | g10182 | g10182.t22 | exon | g10182.t22.exon2 | 8139327 | 8139782 |
| chr_1 | g10182 | g10182.t22 | cds | g10182.t22.CDS2 | 8139327 | 8139782 |
| chr_1 | g10182 | g10182.t22 | exon | g10182.t22.exon3 | 8139855 | 8139870 |
| chr_1 | g10182 | g10182.t22 | cds | g10182.t22.CDS3 | 8139855 | 8139870 |
| chr_1 | g10182 | g10182.t22 | TTS | g10182.t22 | 8140068 | 8140068 |
Sequences
>g10182.t22 Gene=g10182 Length=576
TTTTGTCTTTTATACAAACTATATACACTGAAATTGACACGAAAACAGCTAAATGGTTTA
ATAAAGCATACAGATTCGCCATATATCCGTGCTTTAGGATTCATGTATATTCGCTACACT
CAACCTCCTGCTGATTTATTTGGATGGTATGAGGAGTTTCTTCAAGATGAAGAAGAGATT
GATATTAAAGCTGGTGGAGGCCATATTTTGACAATAGGTCAAATGTGTAGACAATTCCTT
GTAAAGCTCGATTGGTTTAGTACACTCTTTCCACGAATTCCTGTTCCAATACAAAAAAGT
ATAGAACAGCGATTAAATGACTATGACAAACAAAATGGAATTGTAGCTCAACCAATTGTT
TCCATCCCACAACAACCAGAACGACGTGAACGCTCTTCAAAAGAGTATTACAGAAGTGAA
AGGAGACGTTCTCGATCACCGATAGCGAAGCGTTCACGATCACCAACAGAAAGGCGTTAT
AGAGGTGACTTTGATGATGACGCAAGACATTCAAGACGATCACATAGCCGAGAGAAATAT
TCATCAAGTAAGTCTTCAAATTCACGTCGTTATTAA
>g10182.t22 Gene=g10182 Length=157
MYIRYTQPPADLFGWYEEFLQDEEEIDIKAGGGHILTIGQMCRQFLVKLDWFSTLFPRIP
VPIQKSIEQRLNDYDKQNGIVAQPIVSIPQQPERRERSSKEYYRSERRRSRSPIAKRSRS
PTERRYRGDFDDDARHSRRSHSREKYSSSKSSNSRRY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10182.t22 | MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 157 | - |
| 4 | g10182.t22 | MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 109 | - |
| 6 | g10182.t22 | MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 151 | - |
| 2 | g10182.t22 | PANTHER | PTHR23142 | UNCHARACTERIZED | 1 | 152 | 8.1E-32 |
| 3 | g10182.t22 | PANTHER | PTHR23142:SF2 | PRE-MRNA-SPLICING FACTOR 38B | 1 | 152 | 8.1E-32 |
| 1 | g10182.t22 | Pfam | PF03371 | PRP38 family | 1 | 67 | 2.3E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
