General information for g10185.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10185 is located on chr_1: 8152071..8153248 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10185 | g10185.t2 | isoform | g10185.t2 | 8149793 | 8153041 |
| chr_1 | g10185 | g10185.t2 | exon | g10185.t2.exon1 | 8149793 | 8150219 |
| chr_1 | g10185 | g10185.t2 | exon | g10185.t2.exon2 | 8151788 | 8152296 |
| chr_1 | g10185 | g10185.t2 | cds | g10185.t2.CDS1 | 8151799 | 8152110 |
| chr_1 | g10185 | g10185.t2 | exon | g10185.t2.exon3 | 8152362 | 8153041 |
| chr_1 | g10185 | g10185.t2 | TTS | g10185.t2 | 8153819 | 8153819 |
| chr_1 | g10185 | g10185.t2 | TSS | g10185.t2 | NA | NA |
Sequences
>g10185.t2 Gene=g10185 Length=1616
ATTGTCAAATAGAGAAAAGGCCTAAACAAAATTTTGGAAACACACAAAAAGTGTATGGCT
TAAGAATATGAAGAAAATAATTTTGCCAAATCTTTCTATAAACTCCTCTTTTTTTCTATA
AATAATTGCACTTTATCCTAAGCATTATAATCAATCGAAATATATGGAATGCTTTGCACT
AAAATTGATAAATTTTCAAACTATATAAATTTTTTGACATTCCATTAGTCAATGATTTAG
TGTTTTACATAATAGTCGAAAATAAAATATAATATGACAATTCACACAATTGTTTTTTAT
TGAATTTCAGTCACATAGAACATGGTGTATAAGTTAAAATATGGGACTCGTTCAGTTTTT
TAGTTCAACGGATTTTATTTCAAAAACTTTCAACAAAAGTAGTAAACAAAAACAAAGAAA
TTTTTAATATTTTATTTAATGCAAACTTTATTCTTTTATCAATGGTATCAGACTGTGATA
ACATCTGCTTTGGGTTTTGACAGTTATTTAGTAATGCGACATGGAGCTAAAGAAAAAGAA
ACTTTTCAAATGACAGGTGAAAAAATTGAAGAAATTCCTGGACTGAAATGTATTCCAGGA
AATAAATTAGGATGTTACTTCTGCAACGATGTAACTGCACCAGGAAATGTAAGTAAATTA
ATTAATAACAACGTCTGGATGACTATAATTTTCAAATCCCGCACAATCAGTATTACCCAT
ATTAAAGTGATCTATTCCTTGAACTTCTAAATATAATCCATTTTGTACGGAAATTTTTAT
ACCAGTAAGAAACTCTAGAAAAGAATTGCTTACACGATAATTATAAGTATACAAAATTTC
ACCATCAAAAGCGACCACAAATGCATTCTCAGTAATAGCAACAGCCAATTTAAAGAGTTG
ATCAATGCAGAATGGAAAACGGTGCCTTTCTTCGTCTTTACGTACTCCAATGAATCAGTT
TGTGAATTAGCAATAACAGCTCTTTGATGAAAGCGTGCACTTAAGTGAAACATTTGCCGT
TTTGATGCTCCATAATGAAGTTTAATTATGAATGTTCCATTATGATTTCCACACGGAATT
GCACTAATCACAAAAACATGTCCTGGGTAAAATTGTTTAGGAGAATCAAATGAATATTCT
GGTCCTCTCTTTATCTCTTCATGAAGCATCGGCCATGGTGTAGGAAACATTCTACGATGA
TCAACTTGAAAAATTTTTTGTACGTCACCAGTAATGGCAATTGCATGAATTGACTCAAGT
GTCAAACGATAACTAAATGTACAATGTGGCTGATCATTAATAGCGATGTGAAATTTTTCA
TCTCCTGTCATTATCAACACTTTAAAATCCCATCCCGAAATAATAGGGTTTGTCGAGGAC
ATTAAATTCTCATCGATTTCTTCTTCACCCCAGGCACCGTCAATTAATGAATTTCTCATA
ATTGTTTCACTGTGAAATTGCACAGAAATGTGTAATGGTATGTCAGTTGGATCATATTTT
GAGGCAGCTAAATCGATTTCAAAAACACTTGCACCGTCAACTGTTTTCCCAGATATTATA
AAAATATGTCCAACTTCAATTGGCCCATAAAGATTCCCTATGTATGAAGTTAACAT
>g10185.t2 Gene=g10185 Length=103
MQTLFFYQWYQTVITSALGFDSYLVMRHGAKEKETFQMTGEKIEEIPGLKCIPGNKLGCY
FCNDVTAPGNVSKLINNNVWMTIIFKSRTISITHIKVIYSLNF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g10185.t2 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 82 | 5.4E-15 |
| 3 | g10185.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 5 | - |
| 4 | g10185.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 6 | 26 | - |
| 2 | g10185.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 27 | 103 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
