Gene loci information

Transcript annotation

  • This transcript has been annotated as Cell division control protein 6-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10203 g10203.t31 TTS g10203.t31 8201259 8201259
chr_1 g10203 g10203.t31 isoform g10203.t31 8201330 8202665
chr_1 g10203 g10203.t31 exon g10203.t31.exon1 8201330 8202411
chr_1 g10203 g10203.t31 cds g10203.t31.CDS1 8201330 8202411
chr_1 g10203 g10203.t31 exon g10203.t31.exon2 8202473 8202665
chr_1 g10203 g10203.t31 cds g10203.t31.CDS2 8202473 8202665
chr_1 g10203 g10203.t31 TSS g10203.t31 NA NA

Sequences

>g10203.t31 Gene=g10203 Length=1275
ATGCCTCAAATAAACAAATTAAATGTTACAACACCAAAAAGTAACAAATTTCAATTGGCT
CGACGTGCATTAGCAGACAATTTAAATTTTAAACTTCCTGGACGTGAAAAACAATTTGAA
GAATTGACAAGTTTTCTAACTGAATTGATTAGTACAAAATCATCAGGAAGTTTATATGTA
AATGGACCTCCAGGTAAAAGTGCGACATTAATGAAAATTGTCAACTCTAAGGAGTATGAA
TCAAAATTGAAAATTGCTTTTATCAATTCAACAAGTATCAGTTCAATTGGAGCAATTTAC
AAGAAAATTTGCACAGAACTAAATTTAAAAATTACGGGAAATAGTAATGAAAAGGAGAGT
CTTCAAGCAATTGAAAAATATTTCAATTCCAATCACTCTAAAACAACACTACTGGTTCTC
GATGAAATAGATCAATTATGTACTACGGGCAAAAACCAGAATGTATTGTATCACATTTTC
GAATGGCCTTCAATACCAAATTCAAAACTGATATTAATAGGAATAGCAAATAGTTTAGAT
TTGACTGATCGTTTATTAGTGCGACTACAAGCAAAATGTGAATTGAAACCAAAAGTCATG
CACTTTCCTGCATATACAAAGGCAGAAATAGTTGAGATTTTCAAATCACGTTTAGAAGAA
AGTGATCTTTTTCCACCTGCAGCTATTCAACTTTTAGCTGCAAAAGTTTCTTCTGTTTCT
GGTGATATTAGAAGAGCTCTGAATATTGGAAAGAGAGTAATTGAATTAGCAGAATTAGAA
AAAAGAATAAATGACAAGGCTTTAGATTTAAAGCAACTCGATGCTATTGTAGAATCTGAA
TCAATAACTCCGATTATTAATGAACCAAAAGTTCAAATGAAAGAAGTCATGTCAGTTCTC
AATAATGTTTATGGTTGTTCACAATCTTTGGGTGATGATGTCGATGATGCTTTTCCATTG
CAACAAAAAATACTTATTTGTACGATGCTTTTGATAATTAAAAATGACAAGAACAAAGAT
ATAACTATTGGTCGATTACATGATGTCTATAGAAAAGTTTGCAAAAATCGAAACATTCAC
GCTACTGATTTATCGGAGTTTGTTAATCTCTGTTTGCTTGTCGAGACTAAAGGAATTTTG
CGATTAGCAACTAAAAAAGAACCAAGGTTTCACAAAGTGCATTTGCAGTGGAATGAGGAT
GAAGTTTTTGCTGCATTGAAAGACAAGCAAATGATTACAAATATTCTCAATGAAAAGTCA
TTATTAAGTCGCTAA

>g10203.t31 Gene=g10203 Length=424
MPQINKLNVTTPKSNKFQLARRALADNLNFKLPGREKQFEELTSFLTELISTKSSGSLYV
NGPPGKSATLMKIVNSKEYESKLKIAFINSTSISSIGAIYKKICTELNLKITGNSNEKES
LQAIEKYFNSNHSKTTLLVLDEIDQLCTTGKNQNVLYHIFEWPSIPNSKLILIGIANSLD
LTDRLLVRLQAKCELKPKVMHFPAYTKAEIVEIFKSRLEESDLFPPAAIQLLAAKVSSVS
GDIRRALNIGKRVIELAELEKRINDKALDLKQLDAIVESESITPIINEPKVQMKEVMSVL
NNVYGCSQSLGDDVDDAFPLQQKILICTMLLIIKNDKNKDITIGRLHDVYRKVCKNRNIH
ATDLSEFVNLCLLVETKGILRLATKKEPRFHKVHLQWNEDEVFAALKDKQMITNILNEKS
LLSR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g10203.t31 CDD cd00009 AAA 39 189 3.82821E-4
13 g10203.t31 CDD cd08768 Cdc6_C 319 402 8.88065E-16
10 g10203.t31 Coils Coil Coil 256 276 -
7 g10203.t31 Gene3D G3DSA:3.40.50.300 - 15 193 2.3E-42
8 g10203.t31 Gene3D G3DSA:1.10.8.60 - 194 287 2.6E-6
9 g10203.t31 Gene3D G3DSA:1.10.10.10 winged helix repressor DNA binding domain 318 416 1.8E-14
3 g10203.t31 PANTHER PTHR10763 CELL DIVISION CONTROL PROTEIN 6-RELATED 13 418 1.2E-94
4 g10203.t31 PANTHER PTHR10763:SF26 CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 13 418 1.2E-94
11 g10203.t31 PIRSF PIRSF001767 Cdc6 2 420 1.4E-129
1 g10203.t31 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 60 192 4.8E-10
2 g10203.t31 Pfam PF09079 CDC6, C terminal winged helix domain 326 404 4.3E-16
14 g10203.t31 SMART SM01074 Cdc6_C_2 326 406 1.2E-14
6 g10203.t31 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 32 261 2.42E-30
5 g10203.t31 SUPERFAMILY SSF46785 Winged helix DNA-binding domain 316 415 7.89E-21

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0051301 cell division BP
GO:0006270 DNA replication initiation BP
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values