Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Fatty acid-binding protein, muscle.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10221 g10221.t6 TSS g10221.t6 8339382 8339382
chr_1 g10221 g10221.t6 isoform g10221.t6 8339466 8341897
chr_1 g10221 g10221.t6 exon g10221.t6.exon1 8339466 8339535
chr_1 g10221 g10221.t6 cds g10221.t6.CDS1 8339466 8339535
chr_1 g10221 g10221.t6 exon g10221.t6.exon2 8341180 8341341
chr_1 g10221 g10221.t6 cds g10221.t6.CDS2 8341180 8341341
chr_1 g10221 g10221.t6 exon g10221.t6.exon3 8341410 8341897
chr_1 g10221 g10221.t6 cds g10221.t6.CDS3 8341410 8341564
chr_1 g10221 g10221.t6 TTS g10221.t6 8341894 8341894

Sequences

>g10221.t6 Gene=g10221 Length=720
ATGGCTTGGGAAGGCAAAAAATACAAATTGGATAGACAAGAAAACTTCGAGGAATACATG
AAGAAGATTGGTGTTGGAATGGTTCTTCGTAAGATGGGAATGTCTGTTCATCCTACAGTT
TACCTTGTCAAGGATGGTGATGAATACAGTTTCCATACTGACTCAACTTTCAAAAATACC
GTCATGAAATTCAAGCTCGGAGAAGAATTTGAAAATGAAACATTGGATGGACTACAAACT
GTTATCACTCTCGATGGTAACACAATGACTCAGGTTGAGAAAGGTGAAAAGAAATCGGTG
ATTGTTCGTGAATTCAGCGACAGTGAGGTCGTAGTCACATGTGAATATGATGGCGTAGTG
AGCAAACGCTGGTACAAAGTTGTTTAAATAACTCGAAGTTACCTGCGTATTTTAATCAAG
TCTGCATACGACCAAAAATTTATAATCAACTAAATTTCTTAAAAACATCATCGCCTGTTC
TATTTAACTATTAAATAGAAATGAAAAAAATTGACATTTGTACTACTATTGCTTAATAGC
ACAATGTTTGCATTTATCATATAGGTTGAATTATTATAACATTTTTTTTCAACAATTTAA
TGAGTTTTCCATTTTTCATAATCTAGCATCATGCTTCCAACTATGATGTTTTTTTGATAT
AAATATTTGAGCACTCTATTTTCAAAATTATAAAATAAAGCATTTCTTTAGTATCGCTAA

>g10221.t6 Gene=g10221 Length=128
MAWEGKKYKLDRQENFEEYMKKIGVGMVLRKMGMSVHPTVYLVKDGDEYSFHTDSTFKNT
VMKFKLGEEFENETLDGLQTVITLDGNTMTQVEKGEKKSVIVREFSDSEVVVTCEYDGVV
SKRWYKVV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g10221.t6 Gene3D G3DSA:2.40.128.20 - 2 127 1.8E-44
2 g10221.t6 PANTHER PTHR11955:SF135 FATTY ACID BINDING PROTEIN, ISOFORM C 3 126 2.4E-33
3 g10221.t6 PANTHER PTHR11955 FATTY ACID BINDING PROTEIN 3 126 2.4E-33
5 g10221.t6 PRINTS PR00178 Fatty acid-binding protein signature 4 26 2.4E-16
6 g10221.t6 PRINTS PR00178 Fatty acid-binding protein signature 63 79 2.4E-16
4 g10221.t6 PRINTS PR00178 Fatty acid-binding protein signature 107 127 2.4E-16
1 g10221.t6 Pfam PF00061 Lipocalin / cytosolic fatty-acid binding protein family 7 121 4.8E-13
8 g10221.t6 ProSitePatterns PS00214 Cytosolic fatty-acid binding proteins signature. 6 23 -
7 g10221.t6 SUPERFAMILY SSF50814 Lipocalins 2 126 2.41E-36

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008289 lipid binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values