General information for g10255.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10255 is located on chr_1: 8551553..8553329 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10255 | g10255.t3 | isoform | g10255.t3 | 8551553 | 8552820 |
| chr_1 | g10255 | g10255.t3 | exon | g10255.t3.exon1 | 8551553 | 8552543 |
| chr_1 | g10255 | g10255.t3 | cds | g10255.t3.CDS1 | 8551555 | 8552543 |
| chr_1 | g10255 | g10255.t3 | exon | g10255.t3.exon2 | 8552594 | 8552820 |
| chr_1 | g10255 | g10255.t3 | cds | g10255.t3.CDS2 | 8552594 | 8552696 |
| chr_1 | g10255 | g10255.t3 | TSS | g10255.t3 | 8553435 | 8553435 |
| chr_1 | g10255 | g10255.t3 | TTS | g10255.t3 | NA | NA |
Sequences
>g10255.t3 Gene=g10255 Length=1218
GCGGTCAAGTCGTGGTTTGCATATTGCAAGATGCTATGTTAAGGTAAACGAATGGGATCT
TGCTCGAGATTGGTTACAACGATATCTAGACACAAAACAGGATGATCCTGTAGCTCACAG
ACTTATGGCCGAAATATATGAGCGTCTTCATAAAACAGAAGAAGCCATTACATCATATCA
GCGCTCATATAATTTAAATAACAAACAAAATGATATCATTAAACATGTCTGCCGGCTTTA
TCTGCTTAATGGTGGTTGGTCTTCATGCCCTGGAAAAGTTAAATACTGGTGTGAATTAGC
AGAAAATGAAAATATTCGCGACGAGAATATAGCTGATCTCCAATCAAAAATTGGAGTAAA
AGTCACCGCCAGTGGTAGTACAAGCAGTAACAGTAACTTGAAGGAACGAAAAAGTGATGT
AGGCAAAATTCGAACAGAGAAAAAACTACAACATGAACTTTCATCATCATTTAATGAAGA
GTTTAATAATAATTCTCAAAATGGATATACTGATGACGAAATTTTTCACAATGCTTCATC
TAGTTCTTTTAGAACTACACAAATGTCATTTGCACCAATGCCAAATTACAATGAAAAGTT
TGCAGATGTTGAAGATTTGATTCGAAAGCTTTCTGATTTGGTAATTTCTGTAAAGGAAGA
TGTTCTATGTGTTCGAAATGATATAACAAGTTTGAGGGACGATATTCTTAATATTCGTGG
TGATATAACTGATTTGAGTGTTAACAAAGATGCAACTACAGCAAAGGCAATCATTGATGT
CAATAAATCTATTGAAGATCTTACTTGGAATGTGAGTTGCTTGATGAATATTTTTCCAAG
CGCACCTGGGCCTGTTTCACTTCCAACAAATATAAGATTTCCACCTAATCAATTGCCCCC
GCAATTTAATCAAATGTATAACACGGCTTATCCAATTTATCCACCTATACGTCCACAATT
GCCACCACATTTACAATATAATGATCCTCTTGGAATGAATTTGATAATGAATGCTGCTGC
TGCTGCCGCAAATTATGGTTCTCCACTCATTGCTTCTCCACAACAACCTCCACCTCCGCC
TCAACCGCAACAGCCTATTCCACAACAACAAAATATTTCACCAGCAATCACAATTCAAAA
TGGGCAGAAATCGTCTTTAATGGAAGCTTTAAATACGCCATCAGTTTTAAATACATGGAA
TAATACATATAATGCAGC
>g10255.t3 Gene=g10255 Length=364
MAEIYERLHKTEEAITSYQRSYNLNNKQNDIIKHVCRLYLLNGGWSSCPGKVKYWCELAE
NENIRDENIADLQSKIGVKVTASGSTSSNSNLKERKSDVGKIRTEKKLQHELSSSFNEEF
NNNSQNGYTDDEIFHNASSSSFRTTQMSFAPMPNYNEKFADVEDLIRKLSDLVISVKEDV
LCVRNDITSLRDDILNIRGDITDLSVNKDATTAKAIIDVNKSIEDLTWNVSCLMNIFPSA
PGPVSLPTNIRFPPNQLPPQFNQMYNTAYPIYPPIRPQLPPHLQYNDPLGMNLIMNAAAA
AANYGSPLIASPQQPPPPPQPQQPIPQQQNISPAITIQNGQKSSLMEALNTPSVLNTWNN
TYNA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g10255.t3 | Gene3D | G3DSA:1.25.40.10 | - | 1 | 78 | 0.000 |
| g10255.t3 | ProSiteProfiles | PS50293 | TPR repeat region circular profile. | 1 | 28 | 9.126 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed