General information for g1031.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as E3 ubiquitin-protein ligase TRIP12.
Parent gene
- The parent gene g1031 is located on chr_3: 7683212..7684485 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1031 | g1031.t1 | isoform | g1031.t1 | 7683212 | 7684485 |
| chr_3 | g1031 | g1031.t1 | exon | g1031.t1.exon1 | 7683212 | 7683373 |
| chr_3 | g1031 | g1031.t1 | cds | g1031.t1.CDS1 | 7683212 | 7683373 |
| chr_3 | g1031 | g1031.t1 | exon | g1031.t1.exon2 | 7683820 | 7684187 |
| chr_3 | g1031 | g1031.t1 | cds | g1031.t1.CDS2 | 7683820 | 7684187 |
| chr_3 | g1031 | g1031.t1 | exon | g1031.t1.exon3 | 7684242 | 7684485 |
| chr_3 | g1031 | g1031.t1 | cds | g1031.t1.CDS3 | 7684242 | 7684485 |
| chr_3 | g1031 | g1031.t1 | TSS | g1031.t1 | NA | NA |
| chr_3 | g1031 | g1031.t1 | TTS | g1031.t1 | NA | NA |
Sequences
>g1031.t1 Gene=g1031 Length=774
ATGAAAACGAAGTTGGAAACAGGATTGGGTCCGACATTGGAATTTTATGCTTTAGTTTCA
AATGAACTACAGAGAAGTGATTTAAATTTATGGAATGATGCTGAAAATAGTTATAGAAAT
CAAGAAATTAAGGAAACTTTTGCAATAGTTCCTGCAATTTTGAAAAGCAGCAAAAATGAA
GCTCTAAATCTTGATGGATGTCAAATTTCTGACCTCTCATTAAATTTTGTGCTTCCTGGT
CATCCAAACATTGAATTGCTTGAAAATGGTCAAAATATTCCTGTGACAATTTACAATCTT
CATGAATACATTTCATTAGTTTCTCATTGGTTTCTTGTCAAAGGCGTGACTGAACAATTC
GAATCATTCAAAGAAGGTTTCAATTCAATTTTTTCAATTGAAACTTTAAAACTTTTCTAT
CCTGAAGAATTAGAAAATGTCTTTTTGGTTCAGGAAATTTTCAAAAATGGAATACGAAAA
TGTTGGCTGAATGTTGCAGAACTGATCATGGATTTACACAAGAATCGATTGTCATTTTTG
CAATTCATCACTGGAACACCAAAATTGCCAGTTGGTGGCTTTAAATCTTTGACACCGCCA
TTTACGATTGTTGCGAAGAAAATTGATGAAAATCAAAATCCTGATGATTTTCTACCTTCT
GTTATGACTTGTGTCAATTATTTGAAACTTCCAGAATATTCAAATCGTGAAATTATGAAG
GAAAAATTAAAAATTGCTGCAAATGAAGGAAGTTTGAGTTTTCATCTTTCTTAA
>g1031.t1 Gene=g1031 Length=257
MKTKLETGLGPTLEFYALVSNELQRSDLNLWNDAENSYRNQEIKETFAIVPAILKSSKNE
ALNLDGCQISDLSLNFVLPGHPNIELLENGQNIPVTIYNLHEYISLVSHWFLVKGVTEQF
ESFKEGFNSIFSIETLKLFYPEELENVFLVQEIFKNGIRKCWLNVAELIMDLHKNRLSFL
QFITGTPKLPVGGFKSLTPPFTIVAKKIDENQNPDDFLPSVMTCVNYLKLPEYSNREIMK
EKLKIAANEGSLSFHLS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g1031.t1 | Gene3D | G3DSA:3.30.2160.10 | Hect | 79 | 115 | 0.0000027 |
| 9 | g1031.t1 | Gene3D | G3DSA:3.30.2410.10 | Hect | 152 | 257 | 0.0000000 |
| 2 | g1031.t1 | PANTHER | PTHR45670 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 | 7 | 38 | 0.0000000 |
| 4 | g1031.t1 | PANTHER | PTHR45670:SF1 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 | 7 | 38 | 0.0000000 |
| 3 | g1031.t1 | PANTHER | PTHR45670 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 | 58 | 257 | 0.0000000 |
| 5 | g1031.t1 | PANTHER | PTHR45670:SF1 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 | 58 | 257 | 0.0000000 |
| 1 | g1031.t1 | Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 59 | 257 | 0.0000000 |
| 10 | g1031.t1 | ProSiteProfiles | PS50237 | HECT domain profile. | 85 | 257 | 35.7040000 |
| 7 | g1031.t1 | SMART | SM00119 | hect_3 | 1 | 257 | 0.0000000 |
| 6 | g1031.t1 | SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 8 | 250 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004842 | ubiquitin-protein transferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed