General information for g10311.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as V-type proton ATPase subunit D 1.
Parent gene
- The parent gene g10311 is located on chr_1: 8886389..8887291 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10311 | g10311.t1 | TTS | g10311.t1 | 8886013 | 8886013 |
| chr_1 | g10311 | g10311.t1 | isoform | g10311.t1 | 8886298 | 8887291 |
| chr_1 | g10311 | g10311.t1 | exon | g10311.t1.exon1 | 8886298 | 8886420 |
| chr_1 | g10311 | g10311.t1 | cds | g10311.t1.CDS1 | 8886298 | 8886420 |
| chr_1 | g10311 | g10311.t1 | exon | g10311.t1.exon2 | 8886480 | 8886574 |
| chr_1 | g10311 | g10311.t1 | cds | g10311.t1.CDS2 | 8886480 | 8886574 |
| chr_1 | g10311 | g10311.t1 | exon | g10311.t1.exon3 | 8886630 | 8886993 |
| chr_1 | g10311 | g10311.t1 | cds | g10311.t1.CDS3 | 8886630 | 8886993 |
| chr_1 | g10311 | g10311.t1 | exon | g10311.t1.exon4 | 8887050 | 8887167 |
| chr_1 | g10311 | g10311.t1 | cds | g10311.t1.CDS4 | 8887050 | 8887167 |
| chr_1 | g10311 | g10311.t1 | exon | g10311.t1.exon5 | 8887251 | 8887291 |
| chr_1 | g10311 | g10311.t1 | cds | g10311.t1.CDS5 | 8887251 | 8887291 |
| chr_1 | g10311 | g10311.t1 | TSS | g10311.t1 | 8887390 | 8887390 |
Sequences
>g10311.t1 Gene=g10311 Length=741
ATGTCTGGAAAAGATCGTATTCCAATATTCCCCAGTCGTGGAGCCCAAACTATGATGAAA
GCTCGTCTTGCTGGTGCTCACAAAGGACATGGTTTACTTAAAAAGAAAGCTGATGCGTTA
CAAATGCGTTTCCGTTTGATTTTAGCTAAAATCATTGAAACGAAACAACTTATGGGTGAT
GTAATGAAAGAGGCAGCATTCTCATTAGCCGAAGCTAAATTTGCCACTGGTGATTTCAAT
CAAGTCGTCCTTCAAAATGTGACAAAAGCTCAAATCAAAATTCGTACTAAGAAGGATAAT
GTAGCAGGTGTGCAGCTTCCAATTTTTGAGTCGTATCAAGATGGATCTGATACTTATGAA
TTGGCCGGTCTTGCCCGTGGTGGTCAACAATTGCAAAAGTTGAAGAAAAATTATCAAGCA
GCCGTAAAAGTTCTTGTTGAACTTGCCTCGCTTCAAACATCTTTCGTTACTCTTGATGAA
GTTATTAAAATTACTAATAGGAGAGTTAATGCTATTGAACATGTCATCATTCCAAGAATT
GACCGAACATTATCTTATATTATTTCTGAATTGGACGAGTATGAAAGAGAAGAATTTTAT
CGCTTAAAAAAAATTCAGGATAAAAAACGTATTGCGCGTAAAAAGGTTGAAGCTGCAAAA
GCAGAACTTTTAGCACAAGGAGTTGATACTAGAGCTGTTAACAACATGCTAGATGAAGGT
GATGACGATATTCTTTTCTAA
>g10311.t1 Gene=g10311 Length=246
MSGKDRIPIFPSRGAQTMMKARLAGAHKGHGLLKKKADALQMRFRLILAKIIETKQLMGD
VMKEAAFSLAEAKFATGDFNQVVLQNVTKAQIKIRTKKDNVAGVQLPIFESYQDGSDTYE
LAGLARGGQQLQKLKKNYQAAVKVLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRI
DRTLSYIISELDEYEREEFYRLKKIQDKKRIARKKVEAAKAELLAQGVDTRAVNNMLDEG
DDDILF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g10311.t1 | Coils | Coil | Coil | 202 | 222 | - |
| 2 | g10311.t1 | PANTHER | PTHR11671 | V-TYPE ATP SYNTHASE SUBUNIT D | 1 | 234 | 2.8E-90 |
| 1 | g10311.t1 | Pfam | PF01813 | ATP synthase subunit D | 18 | 206 | 4.1E-74 |
| 4 | g10311.t1 | TIGRFAM | TIGR00309 | V_ATPase_subD: V-type ATPase, D subunit | 9 | 209 | 1.7E-59 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
KEGG
Orthology
- This transcript has been annotated with K02149 (V-type H+-transporting ATPase subunit D)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
