General information for g10319.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Sodium/potassium-transporting ATPase subunit beta-2.
Parent gene
- The parent gene g10319 is located on chr_1: 8910749..8912127 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10319 | g10319.t4 | isoform | g10319.t4 | 8907293 | 8908474 |
| chr_1 | g10319 | g10319.t4 | exon | g10319.t4.exon1 | 8907293 | 8907966 |
| chr_1 | g10319 | g10319.t4 | cds | g10319.t4.CDS1 | 8907863 | 8907966 |
| chr_1 | g10319 | g10319.t4 | exon | g10319.t4.exon2 | 8908034 | 8908202 |
| chr_1 | g10319 | g10319.t4 | cds | g10319.t4.CDS2 | 8908034 | 8908202 |
| chr_1 | g10319 | g10319.t4 | exon | g10319.t4.exon3 | 8908263 | 8908474 |
| chr_1 | g10319 | g10319.t4 | cds | g10319.t4.CDS3 | 8908263 | 8908319 |
| chr_1 | g10319 | g10319.t4 | TSS | g10319.t4 | 8909285 | 8909285 |
| chr_1 | g10319 | g10319.t4 | TTS | g10319.t4 | NA | NA |
Sequences
>g10319.t4 Gene=g10319 Length=1055
AAGTTTGTGACGTTGATATTAAAGCATGGGCACCTTGCGTTCAGGAAAACTTTTATAATT
ATCATCACAGTGCACCCTGTATTTTTCTTAAATTGAACAAAATCTTTGGTTGGATTCCAG
ATTATTATAGAGATCCAAATAATTTGCCATCAAATATGCCTAAAGATCTTGTTGATCATA
TTAATAATACTGCTGTAACTGCTCCACATACATTGAATACAATTTGGGTTTCATGTGAAG
GTGAAAATCCTGCTGATTTAGAAAATATCGGACCTGTCAAGTACTATCCTAGAAGAGGAT
TTCCTGGTTATTATTATCCATACGAAAATTCAGAAGGTTATTTATCACCTCTTGTCGCTG
TGCATTTTGAGCGACCTGTCCGTGGAATAATTATCAACGTCGAATGCAAAGCATGGGCAA
AGAACATCAAACACGACCGAGCAGATAGAATAGGATCAGTTCATTTTGAGTTGATGATTG
ATTAATTAAAAATACTGCTATATACTATCAAAAAATTGAATCTCTTTTTTCCAAAGCCTA
AAGTTTTAGAAATTCTTGACTCGATGACAATCTCTAAATAATTACTCAAATTAATTACGT
TTTTCCGAATCTCATTTTAAAAGAGATACATAGAAGAGATGCATGCGTTCACGATTTTAA
TTTTTTTTTTCGCTGAAAAAATCTACATCTGAGATACAAAATTTATTAGGAAGCTTTTTA
GATTGAAAATATGAAAGACAAAAATAAGCAAAAGACAATATGTGAAATGTAATTCTCAAT
TTTGAATTTGAAATAATAAAGTCAGAGAAATTAGATTATAAATCTTAAATTAACCTTTTT
ATTTTCAGTAAAATATGTACAATGTCATAAGTAATCAATTTATCTATAAATTTTACAACA
TTACAATAATTATAATGCATTAACCTTAATCAATCAATGTTTAATATGCAGCAAGCAAGT
ACTTATTAAAACTAAAATATTTAATTCACTACTTTATTAAAATAATTTAGATGAGATTAA
AAACACATATTAGTTACGAAGGAAATAGATACGAT
>g10319.t4 Gene=g10319 Length=109
MPKDLVDHINNTAVTAPHTLNTIWVSCEGENPADLENIGPVKYYPRRGFPGYYYPYENSE
GYLSPLVAVHFERPVRGIIINVECKAWAKNIKHDRADRIGSVHFELMID
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g10319.t4 | Gene3D | G3DSA:2.60.40.1660 | Na | 1 | 109 | 0 |
| 2 | g10319.t4 | PANTHER | PTHR11523:SF46 | SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA-2 | 1 | 109 | 0 |
| 3 | g10319.t4 | PANTHER | PTHR11523 | SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT | 1 | 109 | 0 |
| 1 | g10319.t4 | Pfam | PF00287 | Sodium / potassium ATPase beta chain | 18 | 104 | 0 |
| 5 | g10319.t4 | ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 27 | 5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006813 | potassium ion transport | BP |
| GO:0005890 | sodium:potassium-exchanging ATPase complex | CC |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
