General information for g10326.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10326 is located on chr_1: 8922274..8923044 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10326 | g10326.t2 | TTS | g10326.t2 | 8922253 | 8922253 |
| chr_1 | g10326 | g10326.t2 | isoform | g10326.t2 | 8922274 | 8922812 |
| chr_1 | g10326 | g10326.t2 | exon | g10326.t2.exon1 | 8922274 | 8922812 |
| chr_1 | g10326 | g10326.t2 | cds | g10326.t2.CDS1 | 8922274 | 8922510 |
| chr_1 | g10326 | g10326.t2 | TSS | g10326.t2 | 8923070 | 8923070 |
Sequences
>g10326.t2 Gene=g10326 Length=539
GGACTAAAAATTATACTATAGAAGATGAAAATAAGTTGAGAAACTTAGGTGCAGAGTTTA
TCAAGACAAATAGAGGAGGTCTTATTACATTTCATGGACCTGGACAGCTTGTTGCATATC
CAATTATCAATTTAAAAAATTTCAAGCAAGGTGTTCGTTGGTACGTGAATAGTATTGAAA
GAACGATAATAAATTTATGCCATAAATATGAATTAAACGCAACCACTACAACTGATACGG
GTGTATGGATTAATGATAGAAAGATTTGTGCTATTGGCATTCATGTTAGTCGATATGTGA
CAATGCATGGACTTGCATTGAATTGTAACACTGATTTAAGTTGGTTCAATCATATTGTAC
CTTGTGGAATCGAAGACAAAGAAGTTACATCTCTTTCTAAAGAATGCAAAAGAGACATTC
AAATAAATGATGTTATTCCAGAATTAATTGCAAGCTTCAGCACAATTTTTGAAAGCAAAA
CTATTTTAGTTAATCAAGAACAAGTTGATGAGATTAAAAAAAATTCTTTAGAGAAATAA
>g10326.t2 Gene=g10326 Length=78
MHGLALNCNTDLSWFNHIVPCGIEDKEVTSLSKECKRDIQINDVIPELIASFSTIFESKT
ILVNQEQVDEIKKNSLEK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g10326.t2 | Gene3D | G3DSA:3.30.930.10 | Bira Bifunctional Protein; Domain 2 | 1 | 57 | 0.000 |
| 1 | g10326.t2 | PANTHER | PTHR10993:SF7 | LIPOYLTRANSFERASE 2, MITOCHONDRIAL-RELATED | 1 | 66 | 0.000 |
| 2 | g10326.t2 | PANTHER | PTHR10993 | OCTANOYLTRANSFERASE | 1 | 66 | 0.000 |
| 5 | g10326.t2 | ProSiteProfiles | PS51733 | Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile. | 1 | 60 | 21.806 |
| 3 | g10326.t2 | SUPERFAMILY | SSF55681 | Class II aaRS and biotin synthetases | 1 | 57 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006464 | cellular protein modification process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
