General information for g10333.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ubiquitin-conjugating enzyme E2 N.
Parent gene
- The parent gene g10333 is located on chr_1: 8931805..8932825 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10333 | g10333.t4 | TSS | g10333.t4 | 8931397 | 8931397 |
| chr_1 | g10333 | g10333.t4 | isoform | g10333.t4 | 8931467 | 8932825 |
| chr_1 | g10333 | g10333.t4 | exon | g10333.t4.exon1 | 8931467 | 8931475 |
| chr_1 | g10333 | g10333.t4 | exon | g10333.t4.exon2 | 8931543 | 8931660 |
| chr_1 | g10333 | g10333.t4 | exon | g10333.t4.exon3 | 8931727 | 8932825 |
| chr_1 | g10333 | g10333.t4 | cds | g10333.t4.CDS1 | 8931805 | 8932263 |
| chr_1 | g10333 | g10333.t4 | TTS | g10333.t4 | 8933021 | 8933021 |
Sequences
>g10333.t4 Gene=g10333 Length=1226
TCTTGCGTGCAAGTCTCAAATAGGAAATTCATAGGAAAAATTGCCAACAAAGAATTTACT
TTGGATTGAAAAAAAATTAACAAAGCCATCCAGTGCAAACAAGAAGGGAAGAAAATCGAA
TAAAGTGTAAGCGAGCGTTAAAGGTTTATTTTAAAGACTTAAATAATTCAGCAAAGGAAA
AAAGCAAAATATTGCAACAAAAACAATGGCTGCATTGCCGAGAAGAATTATCAAAGAAAC
TCAACGATTAATGCAAGAACCAGTTCCGGGAATATCTGCAGTTCCCGATGAGAGCAATGC
TCGCTATTTCCATGTAATTGTCACTGGCCCAGAAGACTCTCCATTCGAAGGCGGTCTCTT
TAAATTGGAATTGTTCCTGCCAGAAGATTATCCTATGTCTGCGCCTAAAGTTCGTTTTAT
AACAAAAATTTATCATCCAAATATCGATAGACTAGGTAGAATCTGTTTAGACATTCTCAA
AGACAAATGGTCGCCGGCTCTGCAAATTCGCACTGTTTTGTTGTCGATTCAGGCCTTATT
AAGTGCTCCAAATCCTGATGATCCTCTTGCAAATGATGTTGCTGAATTGTGGAAGGTGAA
TGAGGCTGAAGCAATACGAAATGCCAAAGAATGGACACAACGGTATGCAATGGAGGATAA
TTAAAAGGAGTGCGAATGAAATACTAAATAATTAGAAACAGCAGCATCAATATAATCATC
ATTGCTATGTATGAATTGTTGCAAAAAGAAAAAAAAAACATGCAAAATTATCATTAATTT
TTATTATTTGAGAACGAGGAAAAAATCATTATTTTATCACTCTTAAATTTTTTATTTATT
GCCACCTATTCTTCACACACACACACATGTTACTTTTTTTTTCTTCTCTACTCTCTTAAA
AGTTCTCTTAAATGACACATATTTTTTGGTAGTGGATTTTTACTACTTTTGTGGTAGGTT
TTGATTTTGACACACATTGACACATATGAGATAAATTCCTCGTTTGAGAAAATGATTACA
TGGGATTACATATAAAAAATTAGCAAAAATATTAATTGCAATTGATTCTCATTTTATCAT
GTGTTTTAAAACAATGCATTGTCCTATTTTACCTACCAATCTACTTACTTTACTTATATA
TACATAGCTATTCTTATTACTTTGCTAAAATCAATGATGATATGATGATTTCTTAAGTTG
AAAAAATATGGTTTATTAATGAAGAA
>g10333.t4 Gene=g10333 Length=152
MAALPRRIIKETQRLMQEPVPGISAVPDESNARYFHVIVTGPEDSPFEGGLFKLELFLPE
DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
LANDVAELWKVNEAEAIRNAKEWTQRYAMEDN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10333.t4 | CDD | cd00195 | UBCc | 5 | 144 | 7.42509E-66 |
| 5 | g10333.t4 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 152 | 4.8E-68 |
| 2 | g10333.t4 | PANTHER | PTHR24068:SF193 | UBIQUITIN-CONJUGATING ENZYME E2 N-LIKE | 2 | 148 | 4.1E-78 |
| 3 | g10333.t4 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 2 | 148 | 4.1E-78 |
| 1 | g10333.t4 | Pfam | PF00179 | Ubiquitin-conjugating enzyme | 7 | 143 | 2.8E-47 |
| 7 | g10333.t4 | ProSitePatterns | PS00183 | Ubiquitin-conjugating enzymes active site. | 76 | 91 | - |
| 9 | g10333.t4 | ProSiteProfiles | PS50127 | Ubiquitin-conjugating enzymes family profile. | 6 | 138 | 41.715 |
| 8 | g10333.t4 | SMART | SM00212 | ubc_7 | 6 | 149 | 2.2E-70 |
| 4 | g10333.t4 | SUPERFAMILY | SSF54495 | UBC-like | 5 | 149 | 3.28E-56 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K10580 (ubiquitin-conjugating enzyme E2 N)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
