General information for g10334.t34
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein disulfide-isomerase A3.
Parent gene
- The parent gene g10334 is located on chr_1: 8934649..8935590 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10334 | g10334.t34 | TTS | g10334.t34 | 8933125 | 8933125 |
| chr_1 | g10334 | g10334.t34 | isoform | g10334.t34 | 8933778 | 8935590 |
| chr_1 | g10334 | g10334.t34 | exon | g10334.t34.exon1 | 8933778 | 8933942 |
| chr_1 | g10334 | g10334.t34 | cds | g10334.t34.CDS1 | 8933780 | 8933942 |
| chr_1 | g10334 | g10334.t34 | exon | g10334.t34.exon2 | 8934000 | 8934407 |
| chr_1 | g10334 | g10334.t34 | cds | g10334.t34.CDS2 | 8934000 | 8934407 |
| chr_1 | g10334 | g10334.t34 | exon | g10334.t34.exon3 | 8934468 | 8934696 |
| chr_1 | g10334 | g10334.t34 | cds | g10334.t34.CDS3 | 8934468 | 8934696 |
| chr_1 | g10334 | g10334.t34 | exon | g10334.t34.exon4 | 8934759 | 8934836 |
| chr_1 | g10334 | g10334.t34 | cds | g10334.t34.CDS4 | 8934759 | 8934836 |
| chr_1 | g10334 | g10334.t34 | exon | g10334.t34.exon5 | 8934917 | 8934967 |
| chr_1 | g10334 | g10334.t34 | cds | g10334.t34.CDS5 | 8934917 | 8934967 |
| chr_1 | g10334 | g10334.t34 | exon | g10334.t34.exon6 | 8935028 | 8935106 |
| chr_1 | g10334 | g10334.t34 | cds | g10334.t34.CDS6 | 8935028 | 8935055 |
| chr_1 | g10334 | g10334.t34 | exon | g10334.t34.exon7 | 8935459 | 8935590 |
| chr_1 | g10334 | g10334.t34 | TSS | g10334.t34 | 8935652 | 8935652 |
Sequences
>g10334.t34 Gene=g10334 Length=1142
ATGAAATTACTTGTTTTTCTGTCATTTTTGTTTGTTGCTGAGTTGGCTCTCTCGGCTGAG
AGTGATGTTCTTGAATTGACTGATTCTGATTTTGAAACTACAATCAAAGAATATCCAACA
GTGTTGGCAATGTTCCACGTATACGTATAGCTTAAACCAGAATATGCCAAAGCAGCAGAA
TTGATGAGAACTGATGATCCTCCAATTACTCTTGTCAAAGTTGATTGTACAGAAGGCGGC
AAGGATACTTGCAGCAAATTCGGTGTTTCTGGATATCCCACTCTCAAAATTTTCAGAAAC
GGTGAAAATCCTCAGGATTATAATGGTCCACGTGAAGCAAGTGGTATTGTGAAATATATG
AGAGCACAAGTTGGTCCATCATCAAAGGATCTTCTAACAGTTGAAGCATATGAAAAGTTC
TTGGGTGTTCAAGAGGGTGCCGTAGTTGGATTCTTTGAAAAAGAAACGGATTTGAAGACT
GTTTTCTTAAAATATGCCGATTTGCAACGTGAGAAACTTCGCTTTGCACATTCAAGTGAT
CCAGAAATTCTCAAGAAAGTTGGCGAAACAAACGCTATTCTTCTTTATCGTGCACCACAA
TTGAGTAATAAGTTTGAACCATCTTTTGTTAAATTCACTGGAAAAGATTCAAGTGATCTT
AAAGAATTTGTTAAGAAGAACTTCCACGGTTTAGTTGGTGTACGTAGTCGTGATACTATT
ACTGATTTCAACAATCCATTGGTAACTGCATATTATGCTGTTGATTATATTAAAAATGCA
AAAGGCACAAACTACTGGCGCAATCGTGTACTTAAAGTTGCCAAAGAATGGGAAGGTAAA
ATCAATTTTGCTATTGCTGCTAAAGATGAATTCCAACATGAATTGAATGAATATGGTTAC
GATTATGTCGGTGATAAACCAATAATTTTGGCTCGTGACGCTCAAAATCAAAAGTTCATC
ATGAAAGATGAGTTTTCTGTTGACAATCTTCAAGCATTTGTCAATGATCTTTATGAAGGC
AATCTGGAGCCTTACGTTAAATCAGAAGCAATTCCAGTCGATCAAGATGGCCCAGTTACA
GTTGTAGTTGCAAAGAACTTTAATGAGGCTGTTCCAAAAGATAAGGATGTTTTAATCGAA
TT
>g10334.t34 Gene=g10334 Length=319
MRTDDPPITLVKVDCTEGGKDTCSKFGVSGYPTLKIFRNGENPQDYNGPREASGIVKYMR
AQVGPSSKDLLTVEAYEKFLGVQEGAVVGFFEKETDLKTVFLKYADLQREKLRFAHSSDP
EILKKVGETNAILLYRAPQLSNKFEPSFVKFTGKDSSDLKEFVKKNFHGLVGVRSRDTIT
DFNNPLVTAYYAVDYIKNAKGTNYWRNRVLKVAKEWEGKINFAIAAKDEFQHELNEYGYD
YVGDKPIILARDAQNQKFIMKDEFSVDNLQAFVNDLYEGNLEPYVKSEAIPVDQDGPVTV
VVAKNFNEAVPKDKDVLIE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g10334.t34 | CDD | cd02961 | PDI_a_family | 4 | 59 | 0 |
| 11 | g10334.t34 | CDD | cd03073 | PDI_b’_ERp72_ERp57 | 171 | 276 | 0 |
| 10 | g10334.t34 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 63 | 0 |
| 8 | g10334.t34 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 64 | 171 | 0 |
| 9 | g10334.t34 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 172 | 300 | 0 |
| 3 | g10334.t34 | PANTHER | PTHR18929:SF60 | PROTEIN DISULFIDE-ISOMERASE | 8 | 319 | 0 |
| 4 | g10334.t34 | PANTHER | PTHR18929 | PROTEIN DISULFIDE ISOMERASE | 8 | 319 | 0 |
| 2 | g10334.t34 | Pfam | PF00085 | Thioredoxin | 7 | 60 | 0 |
| 1 | g10334.t34 | Pfam | PF13848 | Thioredoxin-like domain | 92 | 275 | 0 |
| 7 | g10334.t34 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 4 | 64 | 0 |
| 6 | g10334.t34 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 68 | 167 | 0 |
| 5 | g10334.t34 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 169 | 295 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed