General information for g10334.t42
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein disulfide-isomerase A3.
Parent gene
- The parent gene g10334 is located on chr_1: 8934649..8935590 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10334 | g10334.t42 | TTS | g10334.t42 | 8933125 | 8933125 |
| chr_1 | g10334 | g10334.t42 | isoform | g10334.t42 | 8934121 | 8935590 |
| chr_1 | g10334 | g10334.t42 | exon | g10334.t42.exon1 | 8934121 | 8934407 |
| chr_1 | g10334 | g10334.t42 | cds | g10334.t42.CDS1 | 8934122 | 8934407 |
| chr_1 | g10334 | g10334.t42 | exon | g10334.t42.exon2 | 8934468 | 8934696 |
| chr_1 | g10334 | g10334.t42 | cds | g10334.t42.CDS2 | 8934468 | 8934696 |
| chr_1 | g10334 | g10334.t42 | exon | g10334.t42.exon3 | 8934755 | 8934836 |
| chr_1 | g10334 | g10334.t42 | cds | g10334.t42.CDS3 | 8934755 | 8934776 |
| chr_1 | g10334 | g10334.t42 | exon | g10334.t42.exon4 | 8934917 | 8934967 |
| chr_1 | g10334 | g10334.t42 | exon | g10334.t42.exon5 | 8935028 | 8935088 |
| chr_1 | g10334 | g10334.t42 | exon | g10334.t42.exon6 | 8935429 | 8935590 |
| chr_1 | g10334 | g10334.t42 | TSS | g10334.t42 | 8935652 | 8935652 |
Sequences
>g10334.t42 Gene=g10334 Length=872
ATGAAATTACTTGTTTTTCTGTCATTTTTGTTTGTTGCTGAGTTGGCTCTCTCGGCTGAG
AGTGATGTTCTTGAATTGACTGATTCTGATTTTGAAACTACAATCAAAGAATATCCAACA
GTGTTGGCAATGGTAATATAAAATAATAATTACAATAATATACTTAAACCAGAATATGCC
AAAGCAGCAGAATTGATGAGAACTGATGATCCTCCAATTACTCTTGTCAAAGTTGATTGT
ACAGAAGGCGGCAAGGATACTTGCAGCAAATTCGGTGTTTCTGGATATCCCACTCTCAAA
ATTTTCAGAAACGGTGAAAATCCTCAGGATTATAATGGTCCACGTGAAGCAAGTAAGTGG
TATTGTGAAATATATGAGAGCACAAGTTGGTCCATCATCAAAGGATCTTCTAACAGTTGA
AGCATATGAAAAGTTCTTGGGTGTTCAAGAGGGTGCCGTAGTTGGATTCTTTGAAAAAGA
AACGGATTTGAAGACTGTTTTCTTAAAATATGCCGATTTGCAACGTGAGAAACTTCGCTT
TGCACATTCAAGTGATCCAGAAATTCTCAAGAAAGTTGGCGAAACAAACGCTATTCTTCT
TTATCGTGCACCACAATTGAGTAATAAGTTTGAACCATCTTTTGTTAAATTCACTGGAAA
AGATTCAAGTGATCTTAAAGAATTTGTTAAGAAGAACTTCCACGGTTTAGTTGGTGTACG
TAGTCGTGATACTATTACTGATTTCAACAATCCATTGGTAACTGCATATTATGCTGTTGA
TTATATTAAAAATGCAAAAGGCACAAACTACTGGCGCAATCGTGTACTTAAAGTTGCCAA
AGAATGGGAAGGTAAAATCAATTTTGCTATTG
>g10334.t42 Gene=g10334 Length=179
MVHVKQVSGIVKYMRAQVGPSSKDLLTVEAYEKFLGVQEGAVVGFFEKETDLKTVFLKYA
DLQREKLRFAHSSDPEILKKVGETNAILLYRAPQLSNKFEPSFVKFTGKDSSDLKEFVKK
NFHGLVGVRSRDTITDFNNPLVTAYYAVDYIKNAKGTNYWRNRVLKVAKEWEGKINFAI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10334.t42 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 16 | 128 | 0 |
| 5 | g10334.t42 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 130 | 179 | 0 |
| 2 | g10334.t42 | PANTHER | PTHR18929:SF45 | PROTEIN DISULFIDE-ISOMERASE | 7 | 174 | 0 |
| 3 | g10334.t42 | PANTHER | PTHR18929 | PROTEIN DISULFIDE ISOMERASE | 7 | 174 | 0 |
| 1 | g10334.t42 | Pfam | PF13848 | Thioredoxin-like domain | 47 | 178 | 0 |
| 4 | g10334.t42 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 23 | 122 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed