General information for g10355.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10355 is located on chr_1: 9089634..9090424 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10355 | g10355.t11 | isoform | g10355.t11 | 9089105 | 9090424 |
| chr_1 | g10355 | g10355.t11 | exon | g10355.t11.exon1 | 9089105 | 9089229 |
| chr_1 | g10355 | g10355.t11 | exon | g10355.t11.exon2 | 9089428 | 9089576 |
| chr_1 | g10355 | g10355.t11 | cds | g10355.t11.CDS1 | 9089483 | 9089576 |
| chr_1 | g10355 | g10355.t11 | exon | g10355.t11.exon3 | 9089634 | 9090424 |
| chr_1 | g10355 | g10355.t11 | cds | g10355.t11.CDS2 | 9089634 | 9089656 |
| chr_1 | g10355 | g10355.t11 | TTS | g10355.t11 | 9090432 | 9090432 |
| chr_1 | g10355 | g10355.t11 | TSS | g10355.t11 | NA | NA |
Sequences
>g10355.t11 Gene=g10355 Length=1065
GGAAATGGATTGATAGATGAGACAGAATTCCTACAATGGATAGGAAGGATACAAGCATTA
AGAGAAGAGTCAACTCCATCTGCCGATGACGATGATCTCACACAAGATTTAGTGGCAGCT
TTTAGAGTGTTTGACAGAGACAATAATGGTTATATAACACGTGATGAACTTCAGCGAGCA
ATGCAAATGATTGGTGAAAATGTGACTGAAGGACAACTAAATGACATGCTTGCGCTTGCA
GATCTTGACAAAGATGGTAGAATTAATTATGAAGAATTTGCAAGATTGCTATTGTAAGAA
GGAGCACACACATATATTTACTTTTATCTACAAAATAAAAATTTTTGTCCTTAGAAATAA
TGAATTACAATGTTTAAATGTTAAAGAATAAAAATTAAACACCAAAGAGAACACACTTAC
ACACAGAATACACATATATATACAAAATAAATGAATTTTATTTCTCAAAAATTTATTATA
TAATGAAGTAGAAATAAATTTCAGACCTTGAAAATTTTTCTTTTCTTATTTTGCTACATT
TAATTTTCAATGTTTGTCAAGAATATATTTGTAGTAAATAGCTGTTATATAATGGAAAAA
TGAGAATTTTCTTTTTAAATTTTTTAAAACATACAAAAAAGAGAATCAAAATTTCTTCCA
TTTACTTTGAGAAAATTTTTTATTGAAATTGATCAAATACAAGATGAATGAAAAAATATT
AGGAGAGAGTGCAATTTGATATAATTCAATGAAAACAACAAAAAATGAAATATTTTTTTA
AATATTAAAATGAATTTTGTTACGCTTGTTGTGTAGATTTTACATTATAATAATATTATA
CAATTAAATTATACTACACTATTATACATTACATAAATACAATAATATTTAAATACTGAA
AAAAAAAACATAAATAAAAATTATTAATTAAATATTTAGAATGTTAAGTGCATTATAATG
CATTAAAAAACAACACATTTTAAAAAAAGAATGAAGGCAAATGTTGTAGAGAAAATAAGG
AGAAGAATGAACGAGTGAAAAGAGTACTTTAAATAAATTGTTTTG
>g10355.t11 Gene=g10355 Length=38
MQMIGENVTEGQLNDMLALADLDKDGRINYEEFARLLL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10355.t11 | Gene3D | G3DSA:1.10.238.10 | - | 1 | 37 | 3.3E-12 |
| 2 | g10355.t11 | PANTHER | PTHR23050:SF254 | CALCIUM-BINDING PROTEIN E63-1 | 1 | 38 | 1.6E-14 |
| 3 | g10355.t11 | PANTHER | PTHR23050 | CALCIUM BINDING PROTEIN | 1 | 38 | 1.6E-14 |
| 1 | g10355.t11 | Pfam | PF00036 | EF hand | 13 | 37 | 1.6E-7 |
| 5 | g10355.t11 | ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 21 | 33 | - |
| 7 | g10355.t11 | ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 8 | 38 | 12.17 |
| 4 | g10355.t11 | SUPERFAMILY | SSF47473 | EF-hand | 2 | 37 | 7.56E-10 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed