Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10355 g10355.t5 TSS g10355.t5 9060269 9060269
chr_1 g10355 g10355.t5 isoform g10355.t5 9060377 9060950
chr_1 g10355 g10355.t5 exon g10355.t5.exon1 9060377 9060583
chr_1 g10355 g10355.t5 cds g10355.t5.CDS1 9060377 9060583
chr_1 g10355 g10355.t5 exon g10355.t5.exon2 9060681 9060950
chr_1 g10355 g10355.t5 cds g10355.t5.CDS2 9060681 9060950
chr_1 g10355 g10355.t5 TTS g10355.t5 9061083 9061083

Sequences

>g10355.t5 Gene=g10355 Length=477
ATGGGTGATAATAAATTGAATTCAAATGAGACACAATTATTAAAAGCTATGTATGACAAT
ATTACTCATGGATTAGTTGGATTTTTTGCGGCAGCAATTTTATTTACTGATGACTGGGAT
CGAATGTATTGGGCATTAATATGTATGCTACTTTCATCTTTAATTGATGTTGATCATTTT
ATATCAGCATGGTCTTTAAAATTGGCGAATGCAACAAATCTACATTCTCGACCATTTCTT
CACAATTCAACTATACCATTAGTTCTGATTTTTATCCTCATTTTTTGCCACTTATCATAT
CAAGACAACAACATGATAATGACTCTAACTATTCTAATTGTTGCTTTTACGACACATCAT
TTTCGTGATGCATATCGACGAGGGTTAACATTCTTTTTTTATCAAACATCACCATTACCA
TATTATCTCTACATAGGATTAATTTTAATTACACCTTACTTATTAAAGAGTTTTATT

>g10355.t5 Gene=g10355 Length=159
MGDNKLNSNETQLLKAMYDNITHGLVGFFAAAILFTDDWDRMYWALICMLLSSLIDVDHF
ISAWSLKLANATNLHSRPFLHNSTIPLVLIFILIFCHLSYQDNNMIMTLTILIVAFTTHH
FRDAYRRGLTFFFYQTSPLPYYLYIGLILITPYLLKSFI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g10355.t5 PANTHER PTHR13628 UNCHARACTERIZED 9 156 2.1E-40
10 g10355.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 19 -
14 g10355.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 20 36 -
7 g10355.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 37 42 -
16 g10355.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 43 66 -
11 g10355.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 67 77 -
15 g10355.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 78 98 -
6 g10355.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 99 104 -
13 g10355.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 105 121 -
9 g10355.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 122 140 -
12 g10355.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 141 158 -
8 g10355.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 159 159 -
4 g10355.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 20 35 -
5 g10355.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 42 64 -
2 g10355.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 79 101 -
3 g10355.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 131 153 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values