Gene loci information

Transcript annotation

  • This transcript has been annotated as Guanine nucleotide-binding protein subunit beta-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10402 g10402.t13 TTS g10402.t13 9561301 9561301
chr_1 g10402 g10402.t13 isoform g10402.t13 9562117 9566978
chr_1 g10402 g10402.t13 exon g10402.t13.exon1 9562117 9562130
chr_1 g10402 g10402.t13 cds g10402.t13.CDS1 9562119 9562130
chr_1 g10402 g10402.t13 exon g10402.t13.exon2 9562205 9562405
chr_1 g10402 g10402.t13 cds g10402.t13.CDS2 9562205 9562405
chr_1 g10402 g10402.t13 exon g10402.t13.exon3 9562753 9562962
chr_1 g10402 g10402.t13 cds g10402.t13.CDS3 9562753 9562962
chr_1 g10402 g10402.t13 exon g10402.t13.exon4 9563098 9563160
chr_1 g10402 g10402.t13 cds g10402.t13.CDS4 9563098 9563154
chr_1 g10402 g10402.t13 exon g10402.t13.exon5 9566649 9566978
chr_1 g10402 g10402.t13 TSS g10402.t13 9566959 9566959

Sequences

>g10402.t13 Gene=g10402 Length=818
TCGGCTTAATTTGCTTTTTTCAGAGTCGAAAAAATTTGCGTGAAGAAAAAAAAATATTTT
AAGAAATAGGATCAAAATATTCAAAAAATAATAAAGCAAATATGATAAAACTATAAATAA
GGATCAAGTGAAGGTGTGCATAGTGCTGAAATAGTTAAAAATCGAAAATCTGAGCGAGAA
AAAAAAATTTTATCGTGGAAAAGAAAAACGGGGAGTGTAAGAGAAAAAAGCCGATTTTTT
TGACATCCAGCTTTCGATTTATTGAAGCACTAAAGAGAAATTAAGCATTAGAGAATTTTT
AAATAGGAATACCAATTCATTTTTGGTCAGGTGAAAATGAATGAATTGGACGCCTTAAGA
CAAGAAGCTGAAACATTAAAAAATGCTATTCGTGATGCACGGAAAGCAGCATGCGACACC
AGCCTCGTGCAGGCAACGAATAATCTGGAACCAATTGGTCGCATTCAAATGCGTACCAGA
CGCACATTGCGTGGTCATTTAGCAAAAATTTATGCTATGCACTGGGGAAGTGATTCGAGA
AATTTAGTGTCAGCATCTCAAGATGGAAAATTGATTGTCTGGGATTCACATACAACAAAC
AAGGTACACGCAATACCTCTACGTAGTTCTTGGGTTATGACATGCGCGTATGCACCATCC
GGCAGTTTTGTTGCATGTGGCGGTTTGGATAATATCTGTTCAATATATAGCTTAAAGACT
AGAGAAGGAAATGTGCGTGTATCACGTGAACTGCCTGGCCATACTGGCTACTTATCTTGT
TGTCGATTCTTGGATGATAATCAGATAGTAACAAGTTC

>g10402.t13 Gene=g10402 Length=160
MNELDALRQEAETLKNAIRDARKAACDTSLVQATNNLEPIGRIQMRTRRTLRGHLAKIYA
MHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI
CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g10402.t13 Coils Coil Coil 4 24 -
10 g10402.t13 Gene3D G3DSA:2.130.10.10 - 1 160 1.2E-58
3 g10402.t13 PANTHER PTHR19850:SF27 GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT BETA-2 1 160 6.4E-96
4 g10402.t13 PANTHER PTHR19850 GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 1 160 6.4E-96
5 g10402.t13 PRINTS PR00319 Beta G protein (transducin) signature 51 67 1.5E-33
8 g10402.t13 PRINTS PR00319 Beta G protein (transducin) signature 70 84 1.5E-33
7 g10402.t13 PRINTS PR00319 Beta G protein (transducin) signature 89 104 1.5E-33
6 g10402.t13 PRINTS PR00319 Beta G protein (transducin) signature 107 124 1.5E-33
2 g10402.t13 Pfam PF00400 WD domain, G-beta repeat 48 83 5.3E-5
1 g10402.t13 Pfam PF00400 WD domain, G-beta repeat 99 124 0.14
12 g10402.t13 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 70 84 -
15 g10402.t13 ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 51 160 17.904
16 g10402.t13 ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 51 92 13.783
14 g10402.t13 SMART SM00320 WD40_4 44 83 5.5E-7
13 g10402.t13 SMART SM00320 WD40_4 86 125 0.012
9 g10402.t13 SUPERFAMILY SSF50978 WD40 repeat-like 6 159 2.06E-27

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007165 signal transduction BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values