General information for g10409.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Choline kinase alpha.
Parent gene
- The parent gene g10409 is located on chr_1: 9597654..9598377 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10409 | g10409.t6 | isoform | g10409.t6 | 9595004 | 9598377 |
| chr_1 | g10409 | g10409.t6 | exon | g10409.t6.exon1 | 9595004 | 9595021 |
| chr_1 | g10409 | g10409.t6 | exon | g10409.t6.exon2 | 9596116 | 9596228 |
| chr_1 | g10409 | g10409.t6 | exon | g10409.t6.exon3 | 9596291 | 9596517 |
| chr_1 | g10409 | g10409.t6 | exon | g10409.t6.exon4 | 9596635 | 9598377 |
| chr_1 | g10409 | g10409.t6 | cds | g10409.t6.CDS1 | 9596698 | 9597654 |
| chr_1 | g10409 | g10409.t6 | TSS | g10409.t6 | NA | NA |
| chr_1 | g10409 | g10409.t6 | TTS | g10409.t6 | NA | NA |
Sequences
>g10409.t6 Gene=g10409 Length=2101
ATGCAAAGTTTAATTAAGGCTACCAGGTCTAATAGTGACATGAGAGACGTTGCAACAAGA
ATTTGTCGCGAATACTTATCAGGAGCATGGAAGACAATATCACAAGATGAAATTCAAGTC
AAGCGAATGAGTGGCGGTCTCTCAAATTTTTTATACTATGTAAGTTTGCCAAATCGAAAT
GATTTTGGTGAAAATACAAATTTATCTAAACGGACACGTAAAGATAGTTATCATAGCTCT
ATGGAACCTACTAAAGTATTGTTAAGGATTTATGGTCAGAGTCACGGTGAGCATGCTCTT
GAGACAATGCTTACAGAATCTGTTGTGTTCGCATTATTGAGTGAAAGACAATTAGGACGC
TCGTTCTTTGACAACTGCCGAATTATCCGATAGCAAAATTTCTGCAAAAATTGCTGAAAA
AATGGGACAAATACATAGCTTACACATTCCTGTTAGCAAAGAGGCTGATTGGATTTTCAA
TACGATTAATAGATGGTTAAACAATGTTGATGCAATTATGAATGATATCAAAAACAATAA
CAATGATGATGACCAAGTTCCGGAAATTCAGAAACGATTAAGCAAAATTGATTTAAGGCA
TGAAGCGAATTGGTTAAAAAAAATTGCAGAGACCGAGTCGTATCCAGTTGTCTTTTGTCA
TAATGATCTTCAAGAAGGTAACATACTGTTTCGTCAAAATAACTTTGTTCCACCTGATGA
TTTAGTAGAAACACTTGATGAAGAACTTCACAAAATTGATGACCTCTCACCAATGCTTAT
CTCATGTCCAAAAACGAAAATAGAAAATGTTGAAAACACAAAAGTACAGGATACAATTAA
TGGAAATTCGCGTAAAAGATCGTTGGTCGATTCGAGTATTGACAACGAAGAAATTTCAAG
TAACTTTGATAACGATTGTAAGAAAGACGACCCAGAATTAATGATAATAGATTTTGAATA
TTGTGCATATAATTATAGAGGATTTGATATTGCAAATCACTTTTTAGAATGGACTTACGA
TTATACCAACGAAAAATTTCCATTCTTTTTCTATCGTCCCGAAAATTATCCGAACGAAAA
GCAAATAGATAATTTTATTGATTCATATTTGAAAAATATCAATATGGATGCATTTGATAA
TAAAATGACATTTGTAGAGGAGAAGAAACAACTGCTTGAAGAAATTAACCTCTTCACAAT
CGCTTCACATCTATTTTGGACAATTTGGGCTATTGTAAATAGCAGTCAAGAAATAGAATT
CGGTTACTGGGAATATGCGGATATCAGACTAAAAGAATATTTTAATGCAAAAGAAAAGTA
CTTACAATTGAAGCCTATGGCAAAAGAAATATATGATATGCAAATTAGACGAAAGTAAAG
GAATCTCCTTTTTATCTCTTCATATTATATATTTCAAAATTATTACTTCATTTTAATAAT
TTGACTACATTTTTGTATGCTTACGTAATCTTAAGTATAATGGACTGAATTTCTAATTGG
ATGAGAGTTAAATGGCATAAATATCAAATAATATCATAAATGCGCTTGAGAGAAAAACTT
AACGATTTTAATAAATAATATGTGAAATTATTAATTAAGATTAACATTACAAAATGTAAC
ACGATGCATATTAAAAAGAAGTAATGTTATATTTATATAGAGTTACACTTAAATGAAAAA
CTGTACTTATAGTACCTTTCTTCATCAATGCAATTTGCTTAAACTTTTATTCAAACGATT
AATCTTTAGGCAATAATGTATCGATCAAATACGAAAATTTTTTAGCAATAATTTTAATTG
ATATTGTGCACTCACACACATATATGCCTAACTTTTCATTCATAAATATATTAGGTGTGT
ACCTTTGATGTGATAAATATTCAGTCAAATGATATCAAATTGTCAAATACAATATTTATT
AAATATATGATATTTGAACACTTTCATTTTTTTCCTAATTCACGAAGTTTTAAACAATTT
ATGCACCTATTTGATATATTTACAAAGGCTTTTTTTATTTCAAAATTTATATGTCGATAA
TATTTGTATGCGAAATTAAAGAGAATCTTTCAATAAAGAAAATATCTATTTAAAAGGAAA
A
>g10409.t6 Gene=g10409 Length=318
MGQIHSLHIPVSKEADWIFNTINRWLNNVDAIMNDIKNNNNDDDQVPEIQKRLSKIDLRH
EANWLKKIAETESYPVVFCHNDLQEGNILFRQNNFVPPDDLVETLDEELHKIDDLSPMLI
SCPKTKIENVENTKVQDTINGNSRKRSLVDSSIDNEEISSNFDNDCKKDDPELMIIDFEY
CAYNYRGFDIANHFLEWTYDYTNEKFPFFFYRPENYPNEKQIDNFIDSYLKNINMDAFDN
KMTFVEEKKQLLEEINLFTIASHLFWTIWAIVNSSQEIEFGYWEYADIRLKEYFNAKEKY
LQLKPMAKEIYDMQIRRK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g10409.t6 | PANTHER | PTHR22603 | CHOLINE/ETHANOALAMINE KINASE | 1 | 302 | 0 |
| 3 | g10409.t6 | PANTHER | PTHR22603:SF84 | RE24176P | 1 | 302 | 0 |
| 1 | g10409.t6 | Pfam | PF01633 | Choline/ethanolamine kinase | 1 | 221 | 0 |
| 4 | g10409.t6 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 299 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
