General information for g10412.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein kinase shaggy.
Parent gene
- The parent gene g10412 is located on chr_1: 9630341..9632561 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10412 | g10412.t3 | TSS | g10412.t3 | 9621706 | 9621706 |
| chr_1 | g10412 | g10412.t3 | isoform | g10412.t3 | 9622605 | 9629959 |
| chr_1 | g10412 | g10412.t3 | exon | g10412.t3.exon1 | 9622605 | 9623460 |
| chr_1 | g10412 | g10412.t3 | cds | g10412.t3.CDS1 | 9622605 | 9623460 |
| chr_1 | g10412 | g10412.t3 | exon | g10412.t3.exon2 | 9628794 | 9628984 |
| chr_1 | g10412 | g10412.t3 | cds | g10412.t3.CDS2 | 9628794 | 9628984 |
| chr_1 | g10412 | g10412.t3 | exon | g10412.t3.exon3 | 9629048 | 9629131 |
| chr_1 | g10412 | g10412.t3 | cds | g10412.t3.CDS3 | 9629048 | 9629131 |
| chr_1 | g10412 | g10412.t3 | exon | g10412.t3.exon4 | 9629850 | 9629959 |
| chr_1 | g10412 | g10412.t3 | cds | g10412.t3.CDS4 | 9629850 | 9629957 |
| chr_1 | g10412 | g10412.t3 | TTS | g10412.t3 | NA | NA |
Sequences
>g10412.t3 Gene=g10412 Length=1241
ATGCGAGAACTTAATGAAATTCAAACATTCATTGAAGAAAATTTTCATGATGTAAATGAA
GAAATGGCTGAAGTTCAAAATTCATCATCAGAATTTTCACATTTAACAGATAATAGCGAA
AAATGTGTAGTTACAAATGAATCTGATTCGGGAATTATTTACGATCAAATGGATGAAGAA
AAAGATAGAAGTGAACTCAGTATTAATACAAATATAAGTAATGATAAGAATTTATTGACA
GCGCATAATAAATATGTTCTCACTGACAGTGGCATCGATAGTATTTCTAAAATTCCTTCA
TTGCATGATGATTTTCATTCAAAACAGAGTCTTACAAAATGCTCATTGAAATCGTCCTCA
GTCTCAACGATGGCAATGCCGTTACGTGAATCATCTCAACCACATACGACCTCAAAAATG
CGCAGCAAACGATATAGTTTGCCAGATATCGACAAATTGAAAACATACAACGAATGTACC
AAAAAGTCAGCAATCAACCGTAAAACTATGATATGTGATACGAAACAAGAAACCAATAAC
CCGATTCTTCCCTTAGTGCCTCATAAAGATGCTAAACAATCATTACCGAAGCAGCCTCAA
GCTGAAAAATTTGATAATTTTGCAATCGATCCAAAGCTTATTAATAAATATGATGGACTT
TCACAGTCACTGTATTACATCGATGAAAATGGTAGTCCAAAAATTCGTGAACGTTACATT
AAACAACAACGTATGCTTATAGAAAAGCAGGAGCAAAGAAAGCGTGAAAAAGCAGCTCGA
AAGAGCTTGGAATCTGAAAAAGCGACATGTTCATGCTTCAATTTTAGTCGATTATCGAAG
AAACTCAAAGAATTATGTAAAGATGGTTCAAAAGTGACGACAGTGGTCGCAACGCCTGGT
CAAGGACCAGATAGACCTCAAGAAGTTTCCTACTCGGACACCAAAGTCATTGGAAATGGG
AGTTTCGGTGTTGTTTTTCAAGCCAAACTTTGTGACACCGGCGAATTAGTTGCCATTAAA
AAAGTTTTACAGGACAAGAGATTCAAGAATCGTGAATTACAAATTATGAGACGATTGGAG
CACTGTAATATCGTAAAGTTAAAGTACTTTTTCTACTCAAGTGGTGAAAAGAAGGACGAA
GTCTATTTAAATTTAGTGCTCGAATATATTCCAGAGACCGTCTATAAAGTAGCACGCCAA
TATGCAAAAAATAAACAAACGATACCAATTAACTTTATCAG
>g10412.t3 Gene=g10412 Length=413
MRELNEIQTFIEENFHDVNEEMAEVQNSSSEFSHLTDNSEKCVVTNESDSGIIYDQMDEE
KDRSELSINTNISNDKNLLTAHNKYVLTDSGIDSISKIPSLHDDFHSKQSLTKCSLKSSS
VSTMAMPLRESSQPHTTSKMRSKRYSLPDIDKLKTYNECTKKSAINRKTMICDTKQETNN
PILPLVPHKDAKQSLPKQPQAEKFDNFAIDPKLINKYDGLSQSLYYIDENGSPKIRERYI
KQQRMLIEKQEQRKREKAARKSLESEKATCSCFNFSRLSKKLKELCKDGSKVTTVVATPG
QGPDRPQEVSYSDTKVIGNGSFGVVFQAKLCDTGELVAIKKVLQDKRFKNRELQIMRRLE
HCNIVKLKYFFYSSGEKKDEVYLNLVLEYIPETVYKVARQYAKNKQTIPINFI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10412.t3 | Coils | Coil | Coil | 240 | 266 | - |
| 6 | g10412.t3 | Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 295 | 391 | 3.4E-42 |
| 2 | g10412.t3 | PANTHER | PTHR24057:SF8 | GLYCOGEN SYNTHASE KINASE-3 BETA | 274 | 412 | 1.9E-78 |
| 3 | g10412.t3 | PANTHER | PTHR24057 | GLYCOGEN SYNTHASE KINASE-3 ALPHA | 274 | 412 | 1.9E-78 |
| 1 | g10412.t3 | Pfam | PF00069 | Protein kinase domain | 311 | 395 | 6.2E-15 |
| 5 | g10412.t3 | ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 317 | 341 | - |
| 8 | g10412.t3 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 311 | 413 | 14.139 |
| 4 | g10412.t3 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 310 | 406 | 3.09E-22 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed