General information for g10412.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein kinase shaggy.
Parent gene
- The parent gene g10412 is located on chr_1: 9630341..9632561 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10412 | g10412.t5 | isoform | g10412.t5 | 9630341 | 9632201 |
| chr_1 | g10412 | g10412.t5 | exon | g10412.t5.exon1 | 9630341 | 9630533 |
| chr_1 | g10412 | g10412.t5 | cds | g10412.t5.CDS1 | 9630474 | 9630533 |
| chr_1 | g10412 | g10412.t5 | exon | g10412.t5.exon2 | 9631747 | 9631937 |
| chr_1 | g10412 | g10412.t5 | cds | g10412.t5.CDS2 | 9631747 | 9631937 |
| chr_1 | g10412 | g10412.t5 | exon | g10412.t5.exon3 | 9631999 | 9632201 |
| chr_1 | g10412 | g10412.t5 | cds | g10412.t5.CDS3 | 9631999 | 9632053 |
| chr_1 | g10412 | g10412.t5 | TTS | g10412.t5 | 9632304 | 9632304 |
| chr_1 | g10412 | g10412.t5 | TSS | g10412.t5 | NA | NA |
Sequences
>g10412.t5 Gene=g10412 Length=587
TGTTTGGAGTGCAGGTTGCGTGTTAGCAGAACTTCTCCTCGGTCAACCAATTTTCCCGGG
TGATTCAGGCGTTGATCAGTTGGTTGAAATCATAAAAGTATTGGGTACACCAACGAGGGA
TCAAATAAAAGAAATGAATCCTAATTACACTGAATTTAAATTCCCGCAAATTAAAAGTCA
CCCATGGCAAAAGGTGTTCAGAGTACGTACACCTCCTGAGGCAATCGCATTAGTGTCACG
TTTATTGGAATATACACCCGGTGCAAGAATAACACCGCTACAAGCTTGTGCACATCCATT
TTTCAATGAACTTCGAGAGGGCAACAAAGTTTTACCAAACGGTCGTGAATTTCCACCTTT
GTTTAACTTCACTGAGCAAGGTTTAATTAGCAATACAACCATCACTGAATGCAAGTTTGA
GCCCACGCAATCCAAATGATGCTCCAGTCGGTGGACAATCATCATCAAGTGGTGAGCAAC
AACAGCAACCAACGCAACCAACTGATACGGTTGCAACTGCAGCTGCCGACTCAACTGTAA
AATCAGATGCGCAAGCCACTCAAGTCTCAGCATCGTCAATGGGTTAG
>g10412.t5 Gene=g10412 Length=101
MNPNYTEFKFPQIKSHPWQKVFRVRTPPEAIALVSRLLEYTPGARITPLQACAHPFFNEL
REGNKVLPNGREFPPLFNFTEQGLISNTTITECKFEPTQSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g10412.t5 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 98 | 0 |
| 1 | g10412.t5 | PANTHER | PTHR24057:SF8 | GLYCOGEN SYNTHASE KINASE-3 BETA | 1 | 92 | 0 |
| 2 | g10412.t5 | PANTHER | PTHR24057 | GLYCOGEN SYNTHASE KINASE-3 ALPHA | 1 | 92 | 0 |
| 3 | g10412.t5 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 4 | 86 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004672 | protein kinase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
