General information for g10430.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Exocyst complex component 4.
Parent gene
- The parent gene g10430 is located on chr_1: 9757318..9758518 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10430 | g10430.t3 | isoform | g10430.t3 | 9757318 | 9758518 |
| chr_1 | g10430 | g10430.t3 | exon | g10430.t3.exon1 | 9757318 | 9757780 |
| chr_1 | g10430 | g10430.t3 | cds | g10430.t3.CDS1 | 9757418 | 9757780 |
| chr_1 | g10430 | g10430.t3 | exon | g10430.t3.exon2 | 9757835 | 9758008 |
| chr_1 | g10430 | g10430.t3 | cds | g10430.t3.CDS2 | 9757835 | 9758008 |
| chr_1 | g10430 | g10430.t3 | exon | g10430.t3.exon3 | 9758071 | 9758328 |
| chr_1 | g10430 | g10430.t3 | cds | g10430.t3.CDS3 | 9758071 | 9758328 |
| chr_1 | g10430 | g10430.t3 | exon | g10430.t3.exon4 | 9758390 | 9758518 |
| chr_1 | g10430 | g10430.t3 | cds | g10430.t3.CDS4 | 9758390 | 9758518 |
| chr_1 | g10430 | g10430.t3 | TTS | g10430.t3 | 9758711 | 9758711 |
| chr_1 | g10430 | g10430.t3 | TSS | g10430.t3 | NA | NA |
Sequences
>g10430.t3 Gene=g10430 Length=1024
AAAAGACGAAGATATTAGTCGATTTCTCAAGACTTTACCAAATTATCTTGACCTCAAAAC
AGCAAATGCAAAATCCAGACGTGGAAAATTAAAAAATGAAATGTCCGAAGAAGATAGTCC
AACTCAAATTCAACAACGTAATATTCGTGAAGCTGAAATGCTAACAAGTAATTTAGGTGA
TGGAGGCATTTCTCAACATGAAATTTTAAGTGACATTGGAGTGCTGAAAGAACTTGCGAT
TCTACAGGAAAGCATGGAATGGTTTGCATATCGAATCAATGAATTTGCTAATGACCTCAG
AAAGCCTATTACATGTACATCAAAGAATGCAAATGTTTCGACATTACCTACTGAATTGAC
TCAACCAATTATTATTAGAGACGGTACAATTAAGGTGCTAACAAATTTAGCTTTAGGTTT
TGATGAATTGGCAAATACCTGCTTGTTGGTGCTTCATTTAGAGGTTCGTGTGCAATGCTT
CCATTATTTACGATCAAATTCATCGGATAAGTTTAAGGACAATAATCCTAATAAAAACAA
TACTCTTGAACCCGATACTAAAGTACTAAAATTAACTAAAGTTTTGTCAGATCTTGATGA
GGCATTTTCATCAACTTTACATCCACGAAAGACAAAATATATTTTTGAAGGCTTAGCGCA
TCTTGTTGCAAGGATACTCATTATGACGTCAAATTCGATGGAATCATTAGATAATCATTC
AATACAACAGATGATTAGAAATAGTCTTGCTTTACAGCAAACACTCAGCTCAATTACTGC
ACAGCGAGAACAGTTTCTTGATCATGCAAGAAATTATTATGAAATGCTTTATAAAGAACC
TGATGACATTCTCAAAGATATTACTGAGAAGGGCCCAAAATATAGTGAACTTCAGTATTT
ACAAGCTTTGAAGCTTATTTGTCAAGGCCGAGTGAATGAAAATGGAGAAAATTTGCTTAC
AATTTACCAACAAAAGTTAAATCATATATTAGGAACAAAACAACCAAGTGGCATTCAAGT
TTAA
>g10430.t3 Gene=g10430 Length=307
MSEEDSPTQIQQRNIREAEMLTSNLGDGGISQHEILSDIGVLKELAILQESMEWFAYRIN
EFANDLRKPITCTSKNANVSTLPTELTQPIIIRDGTIKVLTNLALGFDELANTCLLVLHL
EVRVQCFHYLRSNSSDKFKDNNPNKNNTLEPDTKVLKLTKVLSDLDEAFSSTLHPRKTKY
IFEGLAHLVARILIMTSNSMESLDNHSIQQMIRNSLALQQTLSSITAQREQFLDHARNYY
EMLYKEPDDILKDITEKGPKYSELQYLQALKLICQGRVNENGENLLTIYQQKLNHILGTK
QPSGIQV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g10430.t3 | PANTHER | PTHR14146 | EXOCYST COMPLEX COMPONENT 4 | 4 | 299 | 0 |
| g10430.t3 | PANTHER | PTHR14146:SF0 | EXOCYST COMPLEX COMPONENT 4 | 4 | 299 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000145 | exocyst | CC |
| GO:0090522 | vesicle tethering involved in exocytosis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
