General information for g10491.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Chitooligosaccharidolytic beta-N-acetylglucosaminidase.
Parent gene
- The parent gene g10491 is located on chr_1: 10155291..10157608 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10491 | g10491.t1 | TSS | g10491.t1 | 10155267 | 10155267 |
| chr_1 | g10491 | g10491.t1 | isoform | g10491.t1 | 10155291 | 10157608 |
| chr_1 | g10491 | g10491.t1 | exon | g10491.t1.exon1 | 10155291 | 10155433 |
| chr_1 | g10491 | g10491.t1 | cds | g10491.t1.CDS1 | 10155291 | 10155433 |
| chr_1 | g10491 | g10491.t1 | exon | g10491.t1.exon2 | 10155848 | 10157406 |
| chr_1 | g10491 | g10491.t1 | cds | g10491.t1.CDS2 | 10155848 | 10157406 |
| chr_1 | g10491 | g10491.t1 | exon | g10491.t1.exon3 | 10157472 | 10157608 |
| chr_1 | g10491 | g10491.t1 | cds | g10491.t1.CDS3 | 10157472 | 10157608 |
| chr_1 | g10491 | g10491.t1 | TTS | g10491.t1 | 10157668 | 10157668 |
Sequences
>g10491.t1 Gene=g10491 Length=1839
ATGGTAACAAGTAAGAAACTTTTATTTTTTGGGTTTGCCGTTGTTGTTGTTTTTGCAGCA
ATAGCAACTTTAATTACAGTACTGGTACTGACAAATAATAAAGAAGAGGAGAAAAATGGA
GAAGATAATGAGAGTTATGAAGGCCCAACATTTGGTTATTTATGCAAAGACTCAATTTGT
GTTCGTACTGAAATAAATCTTTCAAATATCAATGATTCATCAAGTCTTAATGTTTGTCGT
CTCACATGCAATACTGATATTGGTACACTTTGGCCAAAACCTAGTGGTTCAGTAGCATTT
TCAAAGCGAGTTGCACCAATAAATCCAAATCAAATAACTATTTCGACAAATAATTTTAAA
GGTCAAACATATTGGCAAGTAGCATGGCAGAGATTCCGTGAAATGCTATTTCGAAAAATT
CCTACTGATAGCAAGTCAAATAGTCGAGGAAAATCAATTTTAATTGAGATAATTGCTGAG
AATGACGACATTGATTTTAATTATGATACATTTGAGGGCTATAAATTGCGAATAATTGAA
GATTCGAGCAACATTTATGTCTATATAAGTGCTAGAAATTTTTATGGCACGCGCCATGCT
CTTGAAACACTCTCACAATTAGTTGTCTATGATGAATTCAATGAAGAGCTTGTGATTTTG
ACTTATGCAGACATCACAGATGAACCGAAATTCAAACATCGTGGCATTTCTATGGACACT
TCAAGAACATTTTACCCTGTGGACGTGATAAAACGCACAATCAATGGTCTCGCTATGGTT
AAACTCAACACCTTTCACTGGCACATCACTGATGCTCAAAGCTTTCCATTGGAAATCAAG
TCACGACCCGAGTTAACAAGACTTGGTGCATATTCGCCTGATAAAGTCTATACAACGTCC
GACATTCGAGACATTGTTGAATTTGCGAAAGCTCGAGGTGTACGTGTCATTCCTGAGTTT
GATGCACCAGCACATGTAGGTGAAGGTTGGCAAGAAAGTCAACTGACAATGTGCTACAAA
GATTCTTCACAGACTGTTGGCTGGAGGGGTCATTTTGATCCAACAAAAGATGAATTGTAT
AACATTCTTGAGGATATTTATAAAGAAATTGTTGAATCATTCAAGCCAATAGTCATGCAT
ATGGGCGGTGATGAAGTAGCAATTGACTGTTGGAATACGAGTCAAATGATAAAAGATTGG
ATGAATGATAGAAATATGGAAACAAATATTGAAGGTTTTATGAGATTATGGGATTATTTT
CAAAGGAATGCTTTAAGTAAATTTGATGCAGTGAGCAATAGTCAACTGCCAATAATTTTA
TGGACCAGTAGATTAACTGAGGAGCCTTTTTTGACTGAATTTCTTGATAAAAATCGTTAC
ATAATTCAAGTGTGGTTGGATGGTAATGATGCAAAAATCAAAACACTTTTAGAAGCAGGC
TATAAACTTATAATTTCAAATTCTGATGCACTTTATCTTGATTGTGGTGTTGGATGGTGG
GTTAATGAAGGACTTAATTGGTGTTCACCGTATAAAACATGGCAAAAAATTTACAATAAT
CGAATGGAAAGTATTGCAGGCAATTATATTGATCAAATACTTGGTGCAGAAGCAACAATT
TGGTCAGAATCTATCGATGAGGGTGTCATTGACATGAGAATTTGGCCAAGAGCGTCAGCA
TTAGCAGAACGTCTTTGGACGAATCCAACAACACCGTGGGCGAATGCTGAGGCTCGATTG
CTAATGAATAGTCAGTTACTTGTGGAGGTTGGAGAACTTGCTGTAGAACCTTTACAATTA
GAATGGTGTGTGCAGAATGAAAATGAATGCCCTTTCTAA
>g10491.t1 Gene=g10491 Length=612
MVTSKKLLFFGFAVVVVFAAIATLITVLVLTNNKEEEKNGEDNESYEGPTFGYLCKDSIC
VRTEINLSNINDSSSLNVCRLTCNTDIGTLWPKPSGSVAFSKRVAPINPNQITISTNNFK
GQTYWQVAWQRFREMLFRKIPTDSKSNSRGKSILIEIIAENDDIDFNYDTFEGYKLRIIE
DSSNIYVYISARNFYGTRHALETLSQLVVYDEFNEELVILTYADITDEPKFKHRGISMDT
SRTFYPVDVIKRTINGLAMVKLNTFHWHITDAQSFPLEIKSRPELTRLGAYSPDKVYTTS
DIRDIVEFAKARGVRVIPEFDAPAHVGEGWQESQLTMCYKDSSQTVGWRGHFDPTKDELY
NILEDIYKEIVESFKPIVMHMGGDEVAIDCWNTSQMIKDWMNDRNMETNIEGFMRLWDYF
QRNALSKFDAVSNSQLPIILWTSRLTEEPFLTEFLDKNRYIIQVWLDGNDAKIKTLLEAG
YKLIISNSDALYLDCGVGWWVNEGLNWCSPYKTWQKIYNNRMESIAGNYIDQILGAEATI
WSESIDEGVIDMRIWPRASALAERLWTNPTTPWANAEARLLMNSQLLVEVGELAVEPLQL
EWCVQNENECPF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 22 | g10491.t1 | CDD | cd06562 | GH20_HexA_HexB-like | 231 | 581 | 1.63835E-152 |
| 16 | g10491.t1 | Gene3D | G3DSA:3.30.379.10 | Chitobiase | 48 | 228 | 7.9E-46 |
| 17 | g10491.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 229 | 611 | 7.6E-135 |
| 3 | g10491.t1 | PANTHER | PTHR22600 | BETA-HEXOSAMINIDASE | 50 | 610 | 4.7E-138 |
| 4 | g10491.t1 | PANTHER | PTHR22600:SF42 | BETA-HEXOSAMINIDASE | 50 | 610 | 4.7E-138 |
| 21 | g10491.t1 | PIRSF | PIRSF001093 | B-hxosamndse_ab_euk_ | 13 | 612 | 6.3E-151 |
| 9 | g10491.t1 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 187 | 207 | 4.6E-51 |
| 8 | g10491.t1 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 225 | 242 | 4.6E-51 |
| 12 | g10491.t1 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 254 | 275 | 4.6E-51 |
| 10 | g10491.t1 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 308 | 325 | 4.6E-51 |
| 11 | g10491.t1 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 352 | 370 | 4.6E-51 |
| 5 | g10491.t1 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 374 | 387 | 4.6E-51 |
| 6 | g10491.t1 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 533 | 549 | 4.6E-51 |
| 7 | g10491.t1 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 550 | 567 | 4.6E-51 |
| 1 | g10491.t1 | Pfam | PF14845 | beta-acetyl hexosaminidase like | 90 | 207 | 2.8E-9 |
| 2 | g10491.t1 | Pfam | PF00728 | Glycosyl hydrolase family 20, catalytic domain | 231 | 568 | 7.9E-92 |
| 18 | g10491.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 6 | - |
| 20 | g10491.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 30 | - |
| 19 | g10491.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 31 | 612 | - |
| 13 | g10491.t1 | SUPERFAMILY | SSF55545 | beta-N-acetylhexosaminidase-like domain | 90 | 230 | 4.49E-20 |
| 14 | g10491.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 231 | 580 | 8.62E-103 |
| 15 | g10491.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 35 | - |
| 23 | g10491.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004563 | beta-N-acetylhexosaminidase activity | MF |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed