General information for g10505.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10505 is located on chr_1: 10271981..10273519 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10505 | g10505.t18 | isoform | g10505.t18 | 10271981 | 10273519 |
| chr_1 | g10505 | g10505.t18 | exon | g10505.t18.exon1 | 10271981 | 10272966 |
| chr_1 | g10505 | g10505.t18 | cds | g10505.t18.CDS1 | 10272654 | 10272966 |
| chr_1 | g10505 | g10505.t18 | exon | g10505.t18.exon2 | 10273026 | 10273148 |
| chr_1 | g10505 | g10505.t18 | cds | g10505.t18.CDS2 | 10273026 | 10273057 |
| chr_1 | g10505 | g10505.t18 | exon | g10505.t18.exon3 | 10273238 | 10273519 |
| chr_1 | g10505 | g10505.t18 | TSS | g10505.t18 | NA | NA |
| chr_1 | g10505 | g10505.t18 | TTS | g10505.t18 | NA | NA |
Sequences
>g10505.t18 Gene=g10505 Length=1391
AAATACATTTCCAAAATGAATTATTATTTTTAGTGTTTCATATTTAAGTTCACTTCTATC
GTCAACTTTTTATAATGAATAATGATAACTTCACATACACACACATTTCTCTTTTCTTAT
TCTTTAATGTTTTTTTTCTTTATTCTTTTTTTCGTGAAAAATACATAAAATTATCAATAG
AAATTATTCATTGTTTTCTTCTTTAATAATTAATGGATTTATAGATATTGTGGATGAATG
TGAGTTCATTTGCATTAATTCATAAAAAAAATTGAAAAGAAAAAATTCAATGAAAAAAGA
TATAAATGGGAAAGGTAAATTTACTTAATTCTTAGATATCATTATTATACTAGAAGGGAA
TCAAATTATTTATGCTGTTGTTTTAAATCTTTCTAATCTTGCTTGTGCTTTTTCTGCATA
TTCGTCTTTAATAGTGTTTGATATTGTTACTTTTCCTGTAGAGACAGATTCACCAAATCT
TTCTTTTCGTTTCAACAATTTATCTTCATATTCCGTTTTTTTAACGTCATTTGAAATTGC
ACCAAATCTTTCGGCGCGTTTTTTTAATACATCAGTTGAAGCTGTGTTGCCATTGCTGGT
AGAATTTAAATTAGAAGATGTTGATAAACCAAAACGTGCTGCACGAGCACTTAATTTATC
TTGAGATGGCAAAATGCTATTAGTAGTATTTGATGCAGAAACAGCAGCACCAAATTTTTT
TGCGCGCATTTCTAGTCGGTCTTTTGCTGTCAACTCTGAAATTTTAATGGTTTTTTTGCT
GGGTTCACTTGAATCGTCATCTTTTTCTTCTGTTTCAGACTTTTGCTCAAGAAGTGGTTG
TACTGTAATTATGTTGCGTTTTAATGTTATTTTTTTGGCAGGTGCAGGTGTTTCAGGTGT
TGTTGAATTTGAGTTCGATGTTTGTGGTGATTGTAACAAGTCTTTGGTAGACTCCAAAAG
AGACTTTTCTTCATTATCAAGATCGTCATCATTTAATAATTCATCTTCATCAATATGAGA
ATCGACATGAGAAGTATCTAATAATGCTGCAGATAATCTGTCGATAAGTTCTTGTTTATT
TCCAGTAGTGTTTAATCCTTTTTCTTTAAAATAAATTCCTTACCTTCATTTTAGTAATAT
CTTGATCCAACATGTTCAGTTAGGATTTATTATCAATTTAATGTAAATATGGCAATGAAA
TAAATAGATTTCGAGCAATTTTAATGAAATAACAAAAACGCTCTAAAAGTTTCCTTTACA
GATTATTTTTTTCAACAAAGATGCAAAAAACATTTGCATCTACAACAATAAGTTCAAAAA
TTATCCGTTATCTTTGTTATAATAAATTTTATTTTTAAAATGTGGCATGCATTTACGAAA
TGTTAATACAC
>g10505.t18 Gene=g10505 Length=114
MLLVVFDAETAAPNFFARISSRSFAVNSEILMVFLLGSLESSSFSSVSDFCSRSGCTVIM
LRFNVIFLAGAGVSGVVEFEFDVCGDCNKSLVDSKRDFSSLSRSSSFNNSSSSI
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed