General information for g10514.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Transcription elongation regulator 1.
Parent gene
- The parent gene g10514 is located on chr_1: 10311027..10311614 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10514 | g10514.t5 | isoform | g10514.t5 | 10309710 | 10311027 |
| chr_1 | g10514 | g10514.t5 | exon | g10514.t5.exon1 | 10309710 | 10310603 |
| chr_1 | g10514 | g10514.t5 | cds | g10514.t5.CDS1 | 10309767 | 10310603 |
| chr_1 | g10514 | g10514.t5 | exon | g10514.t5.exon2 | 10310677 | 10310846 |
| chr_1 | g10514 | g10514.t5 | cds | g10514.t5.CDS2 | 10310677 | 10310846 |
| chr_1 | g10514 | g10514.t5 | exon | g10514.t5.exon3 | 10310901 | 10311027 |
| chr_1 | g10514 | g10514.t5 | cds | g10514.t5.CDS3 | 10310901 | 10311027 |
| chr_1 | g10514 | g10514.t5 | TTS | g10514.t5 | 10311103 | 10311103 |
| chr_1 | g10514 | g10514.t5 | TSS | g10514.t5 | NA | NA |
Sequences
>g10514.t5 Gene=g10514 Length=1191
AAAGACTTTTTTGATTTATTAAAAGAACATTCTGAGATTGATCGTCATACGCATTGGATG
GATATCAAAAAGAGCTTAGATCAAGATTCTCGTTATAAAGCAGTATCTGATTCAATTTTA
CGTGAAGACTATTTCTATGAGTACATAAAAATACTCAAGGAAGAACGCAAAAAAGAAAAG
TCGAAGAAATCCAAAAAATCGGAGAAAAAAGACAAGAAAAAGAAATCAAAAGATAAAGAT
CGTTCACGAAATGATTCTTCAAGCAAAAATCAGAGTGAAACAATCAATATTGATGATGAT
GACGATATGTCTGAGAAAAAAGATCAAGATAAAGTGACAAATATGGACGTGGAAGATGAT
AATAAATCAGAAATGGAAGTTGACAAATCAGGTTCTGATAGTGACAAAGATCAGGAAGAT
GGCGAACATTCGGGAACAGACGAAGACAGTGAATCAGAAAAAGCTCGAAAAGAACGAGAG
CGTCAACTGAGAGCTGAAGCAAGTATAAAAGAGCGAGAAAAACAAGTCCAGAAAAAACTT
GCAGAACACTTACGTGATCGAGATAAGGAGAGACAACATCATCAAAGAGATGAAGCCATT
AGAAACTTTTCGGCATTACTTGCAGATTTAGTTCGTAATCCTGATTTAACATGGAAAGAA
GTTAAAAAACTACTTAAAAGAGATCACCGTTATGAAGCAGCTGAAGAACTTGATCGAGAT
GAGCGTGAACGTCTTTTCAATGAACACATCAACCTTTTGACTAAAAAGAAGCGTGACAAG
TTTCGTGAAATGCTAGATGAGATTTCATCATTAGAATTAACAAGCTCTTGGAAAGACATT
AAAAAGATAATACGAGATGATCCAAGATATATAAAATTTGGAAATTCTGATAAGTGCGAA
CGAGAATTTAGAGAGTATCTCAGAGATAAATCATCTTCTGCAAAAACATCTTTCAAAGAA
CTTTTGCTTGAGTGTAAATTAATTAACCATAAATCTTACGATACTTACAAAGAGAATCAC
AATCATCTTAAGGAAATTGAAGATATTCTGAAAAATGATAAAAGGTATCTCGTATTGGAA
CATATGTCAAGAGAGAGAACTGACATGATTTTAGATTATTTTGAGGAGCTTAAAAAGAAG
GGTGTACCAGCACCAATAACGAGTGTTGAAAGTAATCGTAGGAAGAAGTAA
>g10514.t5 Gene=g10514 Length=377
MDIKKSLDQDSRYKAVSDSILREDYFYEYIKILKEERKKEKSKKSKKSEKKDKKKKSKDK
DRSRNDSSSKNQSETINIDDDDDMSEKKDQDKVTNMDVEDDNKSEMEVDKSGSDSDKDQE
DGEHSGTDEDSESEKARKERERQLRAEASIKEREKQVQKKLAEHLRDRDKERQHHQRDEA
IRNFSALLADLVRNPDLTWKEVKKLLKRDHRYEAAEELDRDERERLFNEHINLLTKKKRD
KFREMLDEISSLELTSSWKDIKKIIRDDPRYIKFGNSDKCEREFREYLRDKSSSAKTSFK
ELLLECKLINHKSYDTYKENHNHLKEIEDILKNDKRYLVLEHMSRERTDMILDYFEELKK
KGVPAPITSVESNRRKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g10514.t5 | Coils | Coil | Coil | 30 | 50 | - |
| 12 | g10514.t5 | Gene3D | G3DSA:1.10.10.440 | - | 1 | 45 | 4.9E-7 |
| 9 | g10514.t5 | Gene3D | G3DSA:1.10.10.440 | - | 173 | 233 | 2.8E-21 |
| 11 | g10514.t5 | Gene3D | G3DSA:1.10.10.440 | - | 235 | 292 | 3.0E-17 |
| 10 | g10514.t5 | Gene3D | G3DSA:1.10.10.440 | - | 295 | 361 | 1.4E-23 |
| 19 | g10514.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 178 | - |
| 17 | g10514.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 68 | - |
| 18 | g10514.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 178 | - |
| 4 | g10514.t5 | PANTHER | PTHR15377:SF7 | TRANSCRIPTION ELONGATION REGULATOR 1 | 62 | 376 | 4.4E-72 |
| 5 | g10514.t5 | PANTHER | PTHR15377 | TRANSCRIPTION ELONGATION REGULATOR 1 | 62 | 376 | 4.4E-72 |
| 3 | g10514.t5 | Pfam | PF01846 | FF domain | 179 | 230 | 1.5E-10 |
| 2 | g10514.t5 | Pfam | PF01846 | FF domain | 237 | 286 | 1.7E-10 |
| 1 | g10514.t5 | Pfam | PF01846 | FF domain | 295 | 354 | 1.8E-12 |
| 20 | g10514.t5 | ProSiteProfiles | PS51676 | FF domain profile. | 177 | 233 | 9.569 |
| 22 | g10514.t5 | ProSiteProfiles | PS51676 | FF domain profile. | 235 | 290 | 11.182 |
| 21 | g10514.t5 | ProSiteProfiles | PS51676 | FF domain profile. | 291 | 357 | 7.248 |
| 14 | g10514.t5 | SMART | SM00441 | FF_2 | 177 | 233 | 6.3E-9 |
| 16 | g10514.t5 | SMART | SM00441 | FF_2 | 235 | 290 | 1.3E-11 |
| 15 | g10514.t5 | SMART | SM00441 | FF_2 | 292 | 357 | 0.0089 |
| 8 | g10514.t5 | SUPERFAMILY | SSF81698 | FF domain | 3 | 38 | 3.01E-5 |
| 7 | g10514.t5 | SUPERFAMILY | SSF81698 | FF domain | 169 | 240 | 1.3E-15 |
| 6 | g10514.t5 | SUPERFAMILY | SSF81698 | FF domain | 236 | 291 | 6.67E-12 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
