General information for g10542.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative UV radiation resistance-associated gene protein.
Parent gene
- The parent gene g10542 is located on chr_1: 10407977..10408842 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10542 | g10542.t1 | TTS | g10542.t1 | 10405740 | 10405740 |
| chr_1 | g10542 | g10542.t1 | isoform | g10542.t1 | 10405839 | 10407977 |
| chr_1 | g10542 | g10542.t1 | exon | g10542.t1.exon1 | 10405839 | 10405962 |
| chr_1 | g10542 | g10542.t1 | cds | g10542.t1.CDS1 | 10405839 | 10405962 |
| chr_1 | g10542 | g10542.t1 | exon | g10542.t1.exon2 | 10406028 | 10406303 |
| chr_1 | g10542 | g10542.t1 | cds | g10542.t1.CDS2 | 10406028 | 10406303 |
| chr_1 | g10542 | g10542.t1 | exon | g10542.t1.exon3 | 10406374 | 10407977 |
| chr_1 | g10542 | g10542.t1 | cds | g10542.t1.CDS3 | 10406374 | 10407977 |
| chr_1 | g10542 | g10542.t1 | TSS | g10542.t1 | 10408093 | 10408093 |
Sequences
>g10542.t1 Gene=g10542 Length=2004
ATGTTTGGACGAAGTAATAGAGAATTCAAGCCACTTGTTTCTATGCAAATACGATTGAGA
AATCTTATAAAGATTACTGGAATAAACTTTGATTGTGATAATAAATATGATGTATATTTT
ACATTGCATTTTAGTGCATTTTCGAAACCATTCTATACAAGTAAGAGTGTCAAAATTAAG
AATAATAAAGCAGATTGGCCAGAAATCAATTGTGAGCAATATCGGACTAGTTCTCATCGA
TTTATTTGCATTCGTGTATGGCAAACAATGATTGTGAATAATGAAAACAACAATAGTTTA
AAATCAATCAATGAATCAGTGAACAATAATGATAACAAAATGCTATTTCTTTGGGGAATA
TATTTTTCAGGCTTAGTGGTCATTAATCCAAATAGTGAAACTATAAAATTCAAACAAAAC
ACTTTGTTATTTCATCTTGATGGCGGAATATTTACATCCAGCGAGCAAATTCTTTATCAA
AATCAGCAGCAACACCAAATAAATAATATTAATTATAATAGTAATAACAATGTCATCATT
CCATCATCATTGAATGAAGAGGCAGACTTTAAAATATTACCACAAGACTGTGATAAAAGA
GATGGCGATAATAAATACTCAGTTACTAATAATTTTAGTATAAATAATGCCAATAAGTAC
TATCATCAACAAATTGAAAAATCAAATTCACCATCTATATCATCTTCGCCAAATGCAAAT
GATCATGAAAAGATTCTAAATCAAAATATTGACATTGTGGAAATTCTCAATGAAATGATG
TATCACAAGGTGCGTTACGTTTCTCTTGAATTTCCTAAAAATGAAATTCAATGTAGTTAT
TCATTAGAAAAATTATTGAAAATGCAAGAGGATCAACGAGAATATCACAGTCGAATTGAG
AGGAACAAATTATTAGCTAATAAAATTTGTGTCAAGAGTCCTGCATGTTTGGACCTCAAT
CTTATTATGACTAAGCCTGTATTTTATGAGCCACAAAAGAGAACTGGAATGGGAAAAACT
TTGAGCAAGCTGTTGACTCAAGCACCACCTAAGCCTGAACTTTTATTAAAAAGTCACGAT
TTGAAAATTAAAATAGAATGTGCTCGCTTCCGAATAAAATTACTAACGCAAGAACGCGAT
CGTATCAAACAATATAATAAGCAATTGATGGCAAAACGCGAGAAACTAAAAGATGATAAT
ACTGAAATGGAAACATTAACATGGAATAGTTTTAGAACATTGAATCGTGAGAATCTGCGA
GTGTATGAGGAAAAATTAGCTCTACAGCGTGAAGTTTTTACAAATGTTAAACTGGCATTG
TCGGAGACTAGAAGGTTTCTTTTAAAAGAACTCAATGAAATCTATCGTGTGAAAAAGTCT
GATCGTATTTATACAATCAATGGTATTCATTTACCAGATGCAGAATCATATGGAGAGTCT
CAATCGACACCAATTGAAATATCAATTGCACTTGGTTACGTTGCTCATGCAGTGCTCATA
ATTGCAAAAATAATTAATATACCACTTAGAAATGCAATTATCCATGAAGGTTCACGATCA
AAAATTATGGACAATATAAAAGTACTTGCACCATCCGATCGAGTCTTTCCTTTGTTTTGT
AGAATGACGCCTCCACCAAACGTTCTTCTATATGGGGTTTATTTGCTTAATCAAAATATA
TCACAATTGAAATTTATGCTAAACATACCAAGAGGTGATCTTCGAGCAACATTAGCTAAT
TTATGGGATCTTATGAATGGAATTAATGCTGAAATGAGACATTTTGTGGAGGATGTTAAA
CCAACGGAAAATTCAGCATCTTCTATGGATTCTGTACCAATCAATGTTCCTTTATCTCTT
ACACGCTCACTCAATCGAAGAAAATCTAGATCATTAGAAGACTTTGAAGATGTTATGGAG
GATTTTCGAGAAAATATCAATTTATCTGCACCAGATTTATTGAGATCTAATCCTCGAATC
GAAAAACAAATAGAACAAATATAA
>g10542.t1 Gene=g10542 Length=667
MFGRSNREFKPLVSMQIRLRNLIKITGINFDCDNKYDVYFTLHFSAFSKPFYTSKSVKIK
NNKADWPEINCEQYRTSSHRFICIRVWQTMIVNNENNNSLKSINESVNNNDNKMLFLWGI
YFSGLVVINPNSETIKFKQNTLLFHLDGGIFTSSEQILYQNQQQHQINNINYNSNNNVII
PSSLNEEADFKILPQDCDKRDGDNKYSVTNNFSINNANKYYHQQIEKSNSPSISSSPNAN
DHEKILNQNIDIVEILNEMMYHKVRYVSLEFPKNEIQCSYSLEKLLKMQEDQREYHSRIE
RNKLLANKICVKSPACLDLNLIMTKPVFYEPQKRTGMGKTLSKLLTQAPPKPELLLKSHD
LKIKIECARFRIKLLTQERDRIKQYNKQLMAKREKLKDDNTEMETLTWNSFRTLNRENLR
VYEEKLALQREVFTNVKLALSETRRFLLKELNEIYRVKKSDRIYTINGIHLPDAESYGES
QSTPIEISIALGYVAHAVLIIAKIINIPLRNAIIHEGSRSKIMDNIKVLAPSDRVFPLFC
RMTPPPNVLLYGVYLLNQNISQLKFMLNIPRGDLRATLANLWDLMNGINAEMRHFVEDVK
PTENSASSMDSVPINVPLSLTRSLNRRKSRSLEDFEDVMEDFRENINLSAPDLLRSNPRI
EKQIEQI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g10542.t1 | Coils | Coil | Coil | 372 | 406 | - |
| 4 | g10542.t1 | Coils | Coil | Coil | 625 | 645 | - |
| 1 | g10542.t1 | PANTHER | PTHR15157 | UV RADIATION RESISTANCE-ASSOCIATED GENE PROTEIN | 39 | 590 | 3.6E-45 |
| 2 | g10542.t1 | PANTHER | PTHR15157:SF5 | UV RADIATION RESISTANCE-ASSOCIATED GENE PROTEIN | 39 | 590 | 3.6E-45 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K21249 (UV radiation resistance-associated gene protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
