Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Heat shock protein 23.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10587 g10587.t3 isoform g10587.t3 10544008 10546560
chr_1 g10587 g10587.t3 exon g10587.t3.exon1 10544008 10544538
chr_1 g10587 g10587.t3 exon g10587.t3.exon2 10544622 10544686
chr_1 g10587 g10587.t3 exon g10587.t3.exon3 10546043 10546560
chr_1 g10587 g10587.t3 cds g10587.t3.CDS1 10546045 10546560
chr_1 g10587 g10587.t3 TTS g10587.t3 10546716 10546716
chr_1 g10587 g10587.t3 TSS g10587.t3 NA NA

Sequences

>g10587.t3 Gene=g10587 Length=1114
TTATTGAGCTTTTCCATTAGACTCTTCAGATTGTGGTTTGTTTTCTTTAATGCCCAAATG
AGCTGGAGCGTTTGTATGAGTGATAGGAATATGACGTTCATTAGATCCTTCGATAGCTGG
TGGTGGAGCCTTGATTGTAAGAACACCATCACTGGATAAAGTAGATTGAACTGTATTCAT
ATCATACTCCTTTGGCAAGACATATTTGCGAATAAAGTGACGTTCAATTGTGCCATGTGC
ATCATCACGTTCTTCATGCTTTCCTTCAATAATAACTGTTTGATCAACTGTCAATACTGT
GATTTCATTTGGATTGAAATGATGAACATCAACGCAAGCTTGAAAGCCATCTTTGCCAAG
GTGCATAGATTTCTGATCTTTGCTCAACTCATTGACAGCTTCACGAGCAATTTGCCACGG
GCGACGATAACCAGTTGGCAAGTGATGATGATGATGAATATTTGGACGCGGAATGATTCG
ATCAGAAAAAAAATCATTAGGAAGTAATCCTAAACCAAATCGTGGTTCCATACCATGAGA
TAAAAATGGATCCTCAAAGATTGATAATGCGCGTAAATCATGAGACATTTTTACTTAAAT
GGAACCACGATTCGGATTAGGCTTGATTCCTAGTGATTTCTTTTCTGATCGCATTGTTCC
ACGCTCTAGTTACTTGCCAACTGGTTATCGTCGCCCGTGGCAAATTGCTCGTGAAGCTAT
CAATGAGTTGAGCAAAGATCAGAAATCTATGCACCTTGGCAAAGATGGCTTTCAAGCTTG
CGTCGATGTTCATCATTTCAATCCAAATGAAATCACAGTAAAGACAGTTGATCAAACAGT
TATTATTGAAGGAAAGCATGAAGAACGTGATGATGCACATGGCACAATTGAACGTCACTT
TATTCGCAAATATGTCTTGCCAAAGGAGTATGATATGAATACAGTTCAATCTACTTTATC
CAGTGATGGTGTTCTTACAATCAAGGCTCCACCACCAGCTATCGAAGGATCTAATGAACG
TCATATTCCTATCACTCATACAAACGCTCCAGCTCATTTGGGCATTAAAGAGAACAAACC
ACAATCTGAAGAGTCTAATGGAAAGGCTCAATAA

>g10587.t3 Gene=g10587 Length=171
MEPRFGLGLIPSDFFSDRIVPRSSYLPTGYRRPWQIAREAINELSKDQKSMHLGKDGFQA
CVDVHHFNPNEITVKTVDQTVIIEGKHEERDDAHGTIERHFIRKYVLPKEYDMNTVQSTL
SSDGVLTIKAPPPAIEGSNERHIPITHTNAPAHLGIKENKPQSEESNGKAQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g10587.t3 CDD cd06526 metazoan_ACD 54 131 5.83368E-40
10 g10587.t3 Gene3D G3DSA:2.60.40.790 - 31 168 7.3E-30
13 g10587.t3 MobiDBLite mobidb-lite consensus disorder prediction 149 171 -
2 g10587.t3 PANTHER PTHR45640:SF23 HEAT SHOCK PROTEIN 22-RELATED 40 161 3.6E-47
3 g10587.t3 PANTHER PTHR45640 HEAT SHOCK PROTEIN HSP-12.2-RELATED 40 161 3.6E-47
11 g10587.t3 PIRSF PIRSF036514 Sm_HSP_B1 18 171 2.5E-45
7 g10587.t3 PRINTS PR00299 Alpha crystallin signature 52 72 1.1E-20
6 g10587.t3 PRINTS PR00299 Alpha crystallin signature 74 87 1.1E-20
8 g10587.t3 PRINTS PR00299 Alpha crystallin signature 89 108 1.1E-20
5 g10587.t3 PRINTS PR00299 Alpha crystallin signature 111 132 1.1E-20
4 g10587.t3 PRINTS PR00299 Alpha crystallin signature 140 155 1.1E-20
1 g10587.t3 Pfam PF00011 Hsp20/alpha crystallin family 54 145 1.3E-24
14 g10587.t3 ProSiteProfiles PS01031 Small heat shock protein (sHSP) domain profile. 39 148 18.994
9 g10587.t3 SUPERFAMILY SSF49764 HSP20-like chaperones 53 145 2.98E-14

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values