Gene loci information

Transcript annotation

  • This transcript has been annotated as Peptidyl-prolyl cis-trans isomerase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10620 g10620.t14 TSS g10620.t14 10782911 10782911
chr_1 g10620 g10620.t14 isoform g10620.t14 10783321 10784929
chr_1 g10620 g10620.t14 exon g10620.t14.exon1 10783321 10783471
chr_1 g10620 g10620.t14 cds g10620.t14.CDS1 10783403 10783471
chr_1 g10620 g10620.t14 exon g10620.t14.exon2 10784379 10784619
chr_1 g10620 g10620.t14 cds g10620.t14.CDS2 10784379 10784619
chr_1 g10620 g10620.t14 exon g10620.t14.exon3 10784684 10784747
chr_1 g10620 g10620.t14 cds g10620.t14.CDS3 10784684 10784747
chr_1 g10620 g10620.t14 exon g10620.t14.exon4 10784817 10784929
chr_1 g10620 g10620.t14 cds g10620.t14.CDS4 10784817 10784862
chr_1 g10620 g10620.t14 TTS g10620.t14 10785316 10785316

Sequences

>g10620.t14 Gene=g10620 Length=569
AGTTCAGTTTAAGAGTTTGACGAGAACGCACGCAGCATTTTCTACAGTCAGCTTACAATT
AATTCGTAATTTTGCAAGCAAAATGGGATTTCCTCGAGTTTTTTTCGATATGGCCGCTGA
TGGTCAAGCACTTGGAAGAATTGTAATTGAACTTCGTACTGATGTCGTCCCAAAAACATG
CGAAAACTTCCGTGCGTTGTGCACCGGCGAAAAGGGATATGGATATAAAGGTTCAACATT
CCACCGTGTCATTCCCAATTTCATGTGTCAAGGCGGTGACTTTACAAATCACAATGGAAC
TGGAGGAAAATCAATCTATGGCAACAAGTTTGAGGATGAGAACTTCACATTGAAGCACAC
TGGCCCTGGCATTATGTCAATGGCTAATGCAGGACCAAACACTAATGGTTCTCAGTTCTT
CATTACGACTGTGAAAACTAGCTGGTTAGACAACAGTTTTCGGATCAGTTGTCGAAGGCA
TGGATATTGTCAAGAAGATTGAGTCATATGGATCTCAATCAGGCAAGCCATCAAAGAACA
TCACTATTGCCAACTCTGGTCAACTCTAA

>g10620.t14 Gene=g10620 Length=139
MGFPRVFFDMAADGQALGRIVIELRTDVVPKTCENFRALCTGEKGYGYKGSTFHRVIPNF
MCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGIMSMANAGPNTNGSQFFITTVKTS
WLDNSFRISCRRHGYCQED

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g10620.t14 Gene3D G3DSA:2.40.100.10 - 2 129 1.2E-65
2 g10620.t14 PANTHER PTHR11071 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 4 125 1.6E-72
3 g10620.t14 PANTHER PTHR11071:SF408 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE F, MITOCHONDRIAL 4 125 1.6E-72
10 g10620.t14 PIRSF PIRSF001467 Peptidylpro_ismrse 1 131 1.5E-66
7 g10620.t14 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 3.6E-31
6 g10620.t14 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 53 65 3.6E-31
5 g10620.t14 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 96 111 3.6E-31
4 g10620.t14 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 111 123 3.6E-31
1 g10620.t14 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 9 125 8.1E-37
11 g10620.t14 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 48 65 -
12 g10620.t14 ProSiteProfiles PS50072 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 139 36.11
8 g10620.t14 SUPERFAMILY SSF50891 Cyclophilin-like 3 126 1.46E-59

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0003755 peptidyl-prolyl cis-trans isomerase activity MF
GO:0000413 protein peptidyl-prolyl isomerization BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values