Gene loci information

Transcript annotation

  • This transcript has been annotated as Peptidyl-prolyl cis-trans isomerase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10620 g10620.t7 TSS g10620.t7 10782911 10782911
chr_1 g10620 g10620.t7 isoform g10620.t7 10782974 10785323
chr_1 g10620 g10620.t7 exon g10620.t7.exon1 10782974 10782991
chr_1 g10620 g10620.t7 exon g10620.t7.exon2 10783285 10783471
chr_1 g10620 g10620.t7 cds g10620.t7.CDS1 10783298 10783471
chr_1 g10620 g10620.t7 exon g10620.t7.exon3 10784379 10784619
chr_1 g10620 g10620.t7 cds g10620.t7.CDS2 10784379 10784619
chr_1 g10620 g10620.t7 exon g10620.t7.exon4 10784684 10784747
chr_1 g10620 g10620.t7 cds g10620.t7.CDS3 10784684 10784747
chr_1 g10620 g10620.t7 exon g10620.t7.exon5 10784809 10785323
chr_1 g10620 g10620.t7 cds g10620.t7.CDS4 10784809 10784929
chr_1 g10620 g10620.t7 TTS g10620.t7 10785316 10785316

Sequences

>g10620.t7 Gene=g10620 Length=1025
AATTTCTTTAAAAATAAGGGCTCGTTCAGCAATGATTTTCAGAAATTTAACTTCAGTTCA
GTTTAAGAGTTTGACGAGAACGCACGCAGCATTTTCTACAGTCAGCTTACAATTAATTCG
TAATTTTGCAAGCAAAATGGGATTTCCTCGAGTTTTTTTCGATATGGCCGCTGATGGTCA
AGCACTTGGAAGAATTGTAATTGAACTTCGTACTGATGTCGTCCCAAAAACATGCGAAAA
CTTCCGTGCGTTGTGCACCGGCGAAAAGGGATATGGATATAAAGGTTCAACATTCCACCG
TGTCATTCCCAATTTCATGTGTCAAGGCGGTGACTTTACAAATCACAATGGAACTGGAGG
AAAATCAATCTATGGCAACAAGTTTGAGGATGAGAACTTCACATTGAAGCACACTGGCCC
TGGCATTATGTCAATGGCTAATGCAGGACCAAACACTAATGGTTCTCAGTTCTTCATTAC
GACTGTGAAAACTAGCTGGTTAGACAACAGACACGTAGTTTTCGGATCAGTTGTCGAAGG
CATGGATATTGTCAAGAAGATTGAGTCATATGGATCTCAATCAGGCAAGCCATCAAAGAA
CATCACTATTGCCAACTCTGGTCAACTCTAAGCTGCATCTTAAATAACAATTATATAATA
CAACACAAAAATATCTCCCCTTTATCCTTTATTTCTACATTATTTCTTCTAAAATGCCGC
TCATTTTGTCAATGATCAATTGTTTAAGAGAAAAGTAAAACGCAAATGTTCATTTTTTGT
AATTATGAAGTAACAAATTTCAGAATTAAAACACTCCAATATACATAAAACATTTAATTT
AGACATCTTTTGTTCATGAAACTAGGATTCATCTCTTGATTGAATTTGTTGTAAGATCAT
TAAAATTTTCATAACTTGTAATAGTTATGTTCTTATTGAAAATAATGGCATTTAATTATT
TCTCACAGCAAAACCTCTTTAGTTGGCAAATAAATCATTAAAAATAGTTTCAAAAAAGAA
AAACC

>g10620.t7 Gene=g10620 Length=199
MIFRNLTSVQFKSLTRTHAAFSTVSLQLIRNFASKMGFPRVFFDMAADGQALGRIVIELR
TDVVPKTCENFRALCTGEKGYGYKGSTFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFED
ENFTLKHTGPGIMSMANAGPNTNGSQFFITTVKTSWLDNRHVVFGSVVEGMDIVKKIESY
GSQSGKPSKNITIANSGQL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g10620.t7 CDD cd01926 cyclophilin_ABH_like 39 197 1.96564E-116
11 g10620.t7 Gene3D G3DSA:2.40.100.10 - 13 199 2.0E-83
2 g10620.t7 PANTHER PTHR11071 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 27 199 1.6E-91
3 g10620.t7 PANTHER PTHR11071:SF408 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE F, MITOCHONDRIAL 27 199 1.6E-91
12 g10620.t7 PIRSF PIRSF001467 Peptidylpro_ismrse 13 199 4.0E-81
8 g10620.t7 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 59 74 1.2E-39
7 g10620.t7 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 88 100 1.2E-39
6 g10620.t7 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 1.2E-39
5 g10620.t7 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 146 158 1.2E-39
4 g10620.t7 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 159 174 1.2E-39
1 g10620.t7 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 44 196 1.4E-50
14 g10620.t7 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 83 100 -
15 g10620.t7 ProSiteProfiles PS50072 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 42 198 45.853
9 g10620.t7 SUPERFAMILY SSF50891 Cyclophilin-like 29 199 8.18E-78
10 g10620.t7 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 19 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0003755 peptidyl-prolyl cis-trans isomerase activity MF
GO:0000413 protein peptidyl-prolyl isomerization BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values