Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ERC protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10655 g10655.t1 isoform g10655.t1 11135995 11147254
chr_1 g10655 g10655.t1 exon g10655.t1.exon1 11135995 11136136
chr_1 g10655 g10655.t1 cds g10655.t1.CDS1 11135995 11136136
chr_1 g10655 g10655.t1 exon g10655.t1.exon2 11138687 11138884
chr_1 g10655 g10655.t1 cds g10655.t1.CDS2 11138687 11138884
chr_1 g10655 g10655.t1 exon g10655.t1.exon3 11138958 11139125
chr_1 g10655 g10655.t1 cds g10655.t1.CDS3 11138958 11139125
chr_1 g10655 g10655.t1 exon g10655.t1.exon4 11139295 11139683
chr_1 g10655 g10655.t1 cds g10655.t1.CDS4 11139295 11139683
chr_1 g10655 g10655.t1 exon g10655.t1.exon5 11139757 11139853
chr_1 g10655 g10655.t1 cds g10655.t1.CDS5 11139757 11139853
chr_1 g10655 g10655.t1 exon g10655.t1.exon6 11140667 11140722
chr_1 g10655 g10655.t1 cds g10655.t1.CDS6 11140667 11140722
chr_1 g10655 g10655.t1 exon g10655.t1.exon7 11146103 11147254
chr_1 g10655 g10655.t1 cds g10655.t1.CDS7 11146103 11147254
chr_1 g10655 g10655.t1 TSS g10655.t1 NA NA
chr_1 g10655 g10655.t1 TTS g10655.t1 NA NA

Sequences

>g10655.t1 Gene=g10655 Length=2202
ATGTCGCGAGAAGCCTACAATTCACTGCCTAATATTGGAACTCACACTCGTGGAAGTCCA
GGAAACCGTGCCAGAAGACTCACTGAATTGCCAACTGTCGATAAGTCACCTTCACGTGAT
TTTCAAAAAGGAAGTCCGCTAGGACATTTGAAATATAGCAGATTCTCTAGATACGGTCCG
TACCATTCATCACTTTATTATCCACATCATTCTATTGCAGCCATGAGCAGCCCATATTAT
CATCGTGACATGGAGGACCCGATAAGTCCAGCGTTACCGGGACATCATCGCAGTCGAAGC
GCAAGTCGACCGCCTGTCTCGCATACAATGGATTATCCAAGACGATATCAATCGTTAGAT
CGTGGAGGCTTTGCTGATCCACACGACCGTGAATTCGTACCAATTAGAGAACCTCGAGAT
CGATCACGCGACCGTTCATTAGAGCGTGGTCTTTACTTAGAGGAAGAACTTTATGGACGG
TCAGCTCGACAAAGTCCTAATCCTATGATGGGTCCAGATCGAGGTTATTTAGGCGACTTA
CAATATGTCAATACCGATCTACAACGTGAACTCGCCAATCTTAAAAAAGAATTAGAATTA
ACTAATCAAAAGTTAAGTAGTTCAATGCACAGTATTAAAACATTTTGGTCACCAGAGTTG
AAGAAAGAACGAGCAATGCGTAAAGAAGAGAGTGCAAAATACAGTCTCATTAATGACCAA
TTGAAGCTTTTGAATAATGAAAATCAAAAGCAAGCAATGTTGGTACGACAACTTGAAGAA
GAATTAAGAATGAGAATGCGACAGCCAAGTATTGAAGTACAGCAACAAATGGAAACGCTC
TATGCGGAAAATGAGCATTTGACACGAGAAATAGCAATATTGCGCGACACGATAAAAGAG
CTCGAATTACGATTGGAGACACAGAAACAGACGCTCTTGGCTCGCGATGAAAGTATCAAA
AAACTTTTAGAGATGTTACAAAATAAAGGAATGGGCAAAGAGGAAGAACGAGCAATGTTT
CAGCAAATGCAAGCAATGGCACAAAAACAGATGTTCACATCTTCCTATGATCGGTCAAAT
TTTTATGGTGGCTCAACATCAGCAGCTTCAGCATCATCACAACTAATACCTCCACCATCT
GTTGCTGCTGCATCAAGTAGTATTTATACTCCAATTCAATCACTTCCACCTCAACCAACA
ACACCAGCAATGATTGCACCAAGCAGCAATTTAATGACAACCAATACATCGTCATATATT
GGACTTAATCGAATGAGTCCATTGCCAATAAGACGATACAGTTACAGCGGTTTACCATCA
TCAACATCATTTGCTGACTTGAATATGAATTATGATCCTAATGTCATGCACAGAGATAGT
AGCATTACAAATCTTATTAATGAAACATGTCAGTCTATTTCACGATCATCCAACATTCTT
AATCGTCAATTGTCAGCCGATATGGCTCTCAGTTCTGCAAGTTTAACGAATTTAATTGAT
GAAAATATCGAGAGCGACATAATAAAATATGATTTGCTCAATGAAATAACAACGACAGCA
ACTCATGTGCCGCTAAAGTATACAGACACTTTTTATTCTCATCCAAGGCAATTGCCGAAT
GCCATTGCACCATCCTATTTTAATCGTAATGTGTCACATGTGCTCAGTAGCGATGATTAT
TTATTATCAAAGCCAATTTTTAGTAAAAATTATGTTAATCCGATGTCATCATCATATATA
AGCGATGATCATCATTATAATAATTTTTATAATCAAACACCATTACATTATCAACATCAT
TCATATACAACACCATCACACTTTCACTATCACTATTCACAACCATCACATTCTCGTCAT
CATCATCATTATGCATCAAACCCTTGTCTCTCGTCTCATTCATATCATAACGTTTCTTCC
TCATATCCACCACCTTCTATTCACTCAAATATGAATAGCGCATTTAATCGTAATTATAAT
TATCAATCTAATCATCAGCAAGCGTTTTCATCATCGCGTCCACCATCCATTTCATCACTT
AATCGTTATACGGCACTTTCGAATAACTATCCAAACACTTTCAATGCTCAACCATATTAT
CGGACGTCATCACGTCTTGATTTAGATAATCCAAAGAGCAGTGAGATCAAGAGACAAGTA
AGTTTTAAATTTGATGTTGATCAAATGTCATTTGATCCGTAA

>g10655.t1 Gene=g10655 Length=733
MSREAYNSLPNIGTHTRGSPGNRARRLTELPTVDKSPSRDFQKGSPLGHLKYSRFSRYGP
YHSSLYYPHHSIAAMSSPYYHRDMEDPISPALPGHHRSRSASRPPVSHTMDYPRRYQSLD
RGGFADPHDREFVPIREPRDRSRDRSLERGLYLEEELYGRSARQSPNPMMGPDRGYLGDL
QYVNTDLQRELANLKKELELTNQKLSSSMHSIKTFWSPELKKERAMRKEESAKYSLINDQ
LKLLNNENQKQAMLVRQLEEELRMRMRQPSIEVQQQMETLYAENEHLTREIAILRDTIKE
LELRLETQKQTLLARDESIKKLLEMLQNKGMGKEEERAMFQQMQAMAQKQMFTSSYDRSN
FYGGSTSAASASSQLIPPPSVAAASSSIYTPIQSLPPQPTTPAMIAPSSNLMTTNTSSYI
GLNRMSPLPIRRYSYSGLPSSTSFADLNMNYDPNVMHRDSSITNLINETCQSISRSSNIL
NRQLSADMALSSASLTNLIDENIESDIIKYDLLNEITTTATHVPLKYTDTFYSHPRQLPN
AIAPSYFNRNVSHVLSSDDYLLSKPIFSKNYVNPMSSSYISDDHHYNNFYNQTPLHYQHH
SYTTPSHFHYHYSQPSHSRHHHHYASNPCLSSHSYHNVSSSYPPPSIHSNMNSAFNRNYN
YQSNHQQAFSSSRPPSISSLNRYTALSNNYPNTFNAQPYYRTSSRLDLDNPKSSEIKRQV
SFKFDVDQMSFDP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g10655.t1 Coils Coil Coil 177 204 -
7 g10655.t1 Coils Coil Coil 227 261 -
6 g10655.t1 Coils Coil Coil 270 311 -
3 g10655.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 18 -
4 g10655.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 25 -
2 g10655.t1 PANTHER PTHR18861 ELKS/RAB6-INTERACTING/CAST PROTEIN 21 351 7.6E-98
1 g10655.t1 Pfam PF10174 RIM-binding protein of the cytomatrix active zone 185 351 1.6E-37

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed