Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ERC protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10656 g10656.t1 isoform g10656.t1 11150164 11157239
chr_1 g10656 g10656.t1 exon g10656.t1.exon1 11150164 11150208
chr_1 g10656 g10656.t1 cds g10656.t1.CDS1 11150164 11150208
chr_1 g10656 g10656.t1 exon g10656.t1.exon2 11150273 11150350
chr_1 g10656 g10656.t1 cds g10656.t1.CDS2 11150273 11150350
chr_1 g10656 g10656.t1 exon g10656.t1.exon3 11150407 11150735
chr_1 g10656 g10656.t1 cds g10656.t1.CDS3 11150407 11150735
chr_1 g10656 g10656.t1 exon g10656.t1.exon4 11150797 11151139
chr_1 g10656 g10656.t1 cds g10656.t1.CDS4 11150797 11151139
chr_1 g10656 g10656.t1 exon g10656.t1.exon5 11151199 11151315
chr_1 g10656 g10656.t1 cds g10656.t1.CDS5 11151199 11151315
chr_1 g10656 g10656.t1 exon g10656.t1.exon6 11153021 11153371
chr_1 g10656 g10656.t1 cds g10656.t1.CDS6 11153021 11153371
chr_1 g10656 g10656.t1 exon g10656.t1.exon7 11153494 11154921
chr_1 g10656 g10656.t1 cds g10656.t1.CDS7 11153494 11154921
chr_1 g10656 g10656.t1 exon g10656.t1.exon8 11155157 11155554
chr_1 g10656 g10656.t1 cds g10656.t1.CDS8 11155157 11155554
chr_1 g10656 g10656.t1 exon g10656.t1.exon9 11155611 11156267
chr_1 g10656 g10656.t1 cds g10656.t1.CDS9 11155611 11156267
chr_1 g10656 g10656.t1 exon g10656.t1.exon10 11156321 11156512
chr_1 g10656 g10656.t1 cds g10656.t1.CDS10 11156321 11156512
chr_1 g10656 g10656.t1 exon g10656.t1.exon11 11156876 11157010
chr_1 g10656 g10656.t1 cds g10656.t1.CDS11 11156876 11157010
chr_1 g10656 g10656.t1 exon g10656.t1.exon12 11157069 11157123
chr_1 g10656 g10656.t1 cds g10656.t1.CDS12 11157069 11157123
chr_1 g10656 g10656.t1 exon g10656.t1.exon13 11157189 11157239
chr_1 g10656 g10656.t1 cds g10656.t1.CDS13 11157189 11157239
chr_1 g10656 g10656.t1 TSS g10656.t1 NA NA
chr_1 g10656 g10656.t1 TTS g10656.t1 NA NA

Sequences

>g10656.t1 Gene=g10656 Length=4179
ATGAGCATGGCAGCAAAAATGAAAACACTTGAAGAACAACATCAGGACTATCAACGTCAT
ATTTCAGTGCTCAAAGAATCATTATGTGCAAAGGAAGAACATTATAATATGCTTCAGTCA
GATGTTGAAGAATTAAGAAATCGATTGGAAGAGAAGAATCGAATTATTGAAAAACATACA
CAAGGTACAATGCAGTCCCATCAAGAGCGCAACCGTGCTCAGCAAGAAATTGTTGAATTA
AAAGAACATATTGATATAAAAGACCGTAAAATTAGCGTGCTGCAACGAAAAATTGAAAAT
CTCGAAGACCTGCTTAAGGAGAAAGACAATCAAGTTGATATGGCGAGAGCACGCTTAACT
GCCATGCAAGCACACCATTGCAGCTCCGAGGGAGCACTTTCAAGTCTTGAAGAACAAATT
GGTGATAAAGACAAGCAGATGAATATGTTACGTGAACAACGAGACCGTGCTGAAGCAGAA
AAAATTGAAGAGCGCGAATTACATGAACGTGAAATTGCTGAATATAAGATGAAATTGCAT
TCATTTGAAAGTGAAGTTGATAAACTTACAACACGTTTGCATCGAGCACTTGCTGAAAAA
GATCGTCTTGAGACACGCTTAGAGTCAGGTGATTTGGGTAAATCAAGAAGCACTCATGAT
CGAGAACGAGATAGAGATCGAGATTTATATGATAGACGTGGTGTTGGTAGTGATTATGAT
TCAGGATTGAGTCAGAAAATTCAACGATTAGAAATTGAAAATGATCGATTAAGAGCTGAA
CTTGAAAGGTCACAGGCAACATTCGGTCGCACTGCAGTGTCGTCATCACATGAATTAGAT
CGTGTACAAGAACGTGCTGATAAGACAATTGCAGAATTGAGACGAACACAAGCTGAACTT
CGTGTCACACAGAGCGATGCGGAACGGTCACGAGCAGAGAATGCTGCCTTGCAAGAGAAA
CTTGAAAAGAGTCAGGGTGAGGTATATCGCCTTAAGGCTCGCTTAGAGAACGCACAACAA
GAACAAGATACCGTGAAGCAAGAACTCGAACGTCATCAAACTACTGTACAACGATATTAC
AGTGAACGTGATAAGACGGTAAGCGAAATTGAGAAATTACGAGAGGAAATGGAACGTACT
CAAGCGACACTAGGCAAATCTCAATTGACTCAAGAGAAACTTCAAAATGCACTCGATAAG
GCGACTAGTGACGTCGAACATTTGCAGGAGAAACTTGAAAAAGCAACTGCTGAAATTAGA
AGGCTCACATTAGAGAAAGAAAAGCAAACATATGAATTTGAGAATGTTCAATCACAACTT
GACAAAGCACTTGGACAAGCAGCTCGTATACAAAAAGAACGTGAACAAATTCAAGTCGAT
ACCGAGAGATATCGCGAAAAGTGTGAAAAGATTCAAAATCAAATGATTCGTGTGCAAAAA
GAGCGCGATACATTATTTGAAGAATTAGAGAAAGTAAAAGAACGTAATGAGGGTTCACAG
AGTTTAATGCTGAAAGCACAGCGTGACAAAGAAGCACTTCAAACAGAATTGGATGTATTA
AAAGAACGTTGGGAGAAGACACATGCAATACATCAGAAATTACAAATGGAACGTGATGAT
TCAATCACAGAAATTGGAATTCTTAAAGAAAAATTAGATAAGGCACTTTATGCCAGTCAA
AAACTCATTGATGAAAAAGAATCATCAACCAAAGAATTTGAAAAGATCCTCGAGAAGTAT
GACAGGGCACAAAATGAAATCTACAGACTTCAATCAAGAGTCGATACAGCTGAAGCTGAT
CGTAATCGACTCGAAGTTGAAGCCGAGAGATCCACTTTGGCCGCTACGAAGGCTCGAGAG
GATCTAAGAAAACTACAAGAAGAAACATCACGTTTACAAGAGGCATGTGATCGTGCAGCA
TTGCAACTTGGTCGTTCGAAAGAACTCGAAGATAAGGCAAAAGAAGAAGTTGATCTTTAT
AGAGAACGTGCTGATAAATATCAAAATGATTTACGTAAATTACAAGCTGAAAAAGAACAT
TTAATAGCTGAAGCTGAAAGACTCACATATGAAGTTGAACGCAGTCATAATACTCAGACC
AAACATAATGCAGCACTTGAAAGTGCGCATGAAGAGGTCGCAAGACTCAATTTAGAATTA
GAGAAAATGCGTGATCGCTATAATAAAGCACAAGCTGAACTTAGTCATCTGCAAGAAACA
GAACAATATTCACGTGAGAATCGTCGTCTTAAAGAAGAAAATGAAAGACTACGTGAACGC
ATGGATAAAATCATGCTTGAACTTGAACAAATTCGTGGTAAATCACAATACGAGCAAGAA
GCTTACGAGAAGTTTAAAGAGAAACTACAACAGAAAGAAAATGATTTAAGCGCATTAGAA
GCAAAATTACATGAGACAACATTACAGCTTGAACTTTCACGACAAGAAACACAAAAATAC
GTGGCAAATCAAGATAAACAACGTAATGATCTTGAAAGAACACATATTGAATATGAAAAG
CTCAAAGATAAATATGAACGTGTTGTGAAAGAAATGGAACGAATAAATACTGGTGGTGGT
GGTGGCAAATTGAACACAATTAGTCCAAGTCAGTCAATGATTCAATCTATGAATCCTGCT
GATAGAAGTGAAGTCGAACGTCTTAGAGAACGATTAGAAAAAACTCTACAGCAACGAGAT
GCCACTGAGCTTGAAGCTGGTAGATTAGCAAAAGAACTCGAAAAAGCACAAATTCATATG
ACAAAACAACAAGAAGCTTACGAATCAACGCGTATTGAATTCGAGCGAATGTCTGCTGAG
CTCAATCGTGTACTTGAACTTTTAGAGAAATCTGAATCAGAAAAAGAGGCAATGCGTCAT
AATGCCAAGGTATACGAAAAGAGAGACATGCATGCGGGTCAGATTGAGAAGAACATGATG
AAATTAGAATCTGACGTTAAACAATTGACAGCTGAAAGAGATCAATTGGTTGTGCAACTA
GAAAAGAGTCAGGAAATGCTCATGAACTTCCAGAAAGAATTGACTGGTGCAGAACAAGAA
TTGCAGAGATTACGTCAAGAAAATGCAAATCTCAGAAGCAGAAGTCCACAACAAGTACAG
CAAATGCAACAAGAAATAATGAGACTACAACAGTTATTACAAGAAGCAGGACAACGAGGA
GGTTCAGCTAATGGAAATGCAGCAGAGCTTGAACAATGGCGTAAAGTTATCGAACAAGAG
AAGGCACGAGCTGATCAAGCCGAATTGGCAATTCAAGAATTCCAAAAACACCATCAAGCT
ATGGATAAACAATTGCAGCAACAAAGTCAACAACTTCAAGCACTTCAACAGCAAATTCAA
CAACAAACTGCAACGATTCAGCAGCAGAATCAACAGATACAGACTCAACAGCAACAACTA
CAGGCTGCATCAAAGCAACAACCAAATCAACAACAAAACAATGCGCAAATCAATCAACAA
CTCGAGCAGCTTAAGAAAGAACTTACAGCATCAAATACTGAACGTGATCGATTCCAATCA
CAACTTGAAATGCTCGTACAAGAACTTGAAAAGAGTCAAATTGAATTACTCGAAGCTAAT
AAGAGACTGCAATCAATGCAACAAAATAATATCGGTCATCAACAACAGGATGAACAAACG
AGGAAGCAACTTGAAATGCAAATTAAACAAATTGAGGAAGCAAAAGTACAACTTGATAAT
GAAAGAAAACTTGTTGATGAACAAAAGAAATCAATCGAGAAAAAGAGAAAAGAAGTCGAG
GGTAAAGAACAAAAAATGGCAGAACTCAATCAGCAGCTCAATAAACGAAAAGAACAAATG
GATCAGTTAGAAAAATCACTACAAAAAGCAGGCGGATCTGCTGCAGCTACAACAGAGCTT
AGCAAAAAATTGGCTGATACACAGCAACAACTTGAAACAACAATGAAACAACTTGAAGCA
GCAAATGAAGAATCAAAGAGAGCAGCGGCAGAAACAGAACGACTTTTACAACTTGTACAA
ATGTCACAAGAAGAGCAAAACTCTAAAGAGAAGACAATCATGGACCTACAACAAGCCCTG
AAAAATGCTCAAGCTAAAATGAAAGCACAGCAACAAGCACAAGCAGAAGCTGCAAATCCC
GCTCAACAGGCTGCTGGTTTCCTCAAAAGCTTTTTCTAA

>g10656.t1 Gene=g10656 Length=1392
MSMAAKMKTLEEQHQDYQRHISVLKESLCAKEEHYNMLQSDVEELRNRLEEKNRIIEKHT
QGTMQSHQERNRAQQEIVELKEHIDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLT
AMQAHHCSSEGALSSLEEQIGDKDKQMNMLREQRDRAEAEKIEERELHEREIAEYKMKLH
SFESEVDKLTTRLHRALAEKDRLETRLESGDLGKSRSTHDRERDRDRDLYDRRGVGSDYD
SGLSQKIQRLEIENDRLRAELERSQATFGRTAVSSSHELDRVQERADKTIAELRRTQAEL
RVTQSDAERSRAENAALQEKLEKSQGEVYRLKARLENAQQEQDTVKQELERHQTTVQRYY
SERDKTVSEIEKLREEMERTQATLGKSQLTQEKLQNALDKATSDVEHLQEKLEKATAEIR
RLTLEKEKQTYEFENVQSQLDKALGQAARIQKEREQIQVDTERYREKCEKIQNQMIRVQK
ERDTLFEELEKVKERNEGSQSLMLKAQRDKEALQTELDVLKERWEKTHAIHQKLQMERDD
SITEIGILKEKLDKALYASQKLIDEKESSTKEFEKILEKYDRAQNEIYRLQSRVDTAEAD
RNRLEVEAERSTLAATKAREDLRKLQEETSRLQEACDRAALQLGRSKELEDKAKEEVDLY
RERADKYQNDLRKLQAEKEHLIAEAERLTYEVERSHNTQTKHNAALESAHEEVARLNLEL
EKMRDRYNKAQAELSHLQETEQYSRENRRLKEENERLRERMDKIMLELEQIRGKSQYEQE
AYEKFKEKLQQKENDLSALEAKLHETTLQLELSRQETQKYVANQDKQRNDLERTHIEYEK
LKDKYERVVKEMERINTGGGGGKLNTISPSQSMIQSMNPADRSEVERLRERLEKTLQQRD
ATELEAGRLAKELEKAQIHMTKQQEAYESTRIEFERMSAELNRVLELLEKSESEKEAMRH
NAKVYEKRDMHAGQIEKNMMKLESDVKQLTAERDQLVVQLEKSQEMLMNFQKELTGAEQE
LQRLRQENANLRSRSPQQVQQMQQEIMRLQQLLQEAGQRGGSANGNAAELEQWRKVIEQE
KARADQAELAIQEFQKHHQAMDKQLQQQSQQLQALQQQIQQQTATIQQQNQQIQTQQQQL
QAASKQQPNQQQNNAQINQQLEQLKKELTASNTERDRFQSQLEMLVQELEKSQIELLEAN
KRLQSMQQNNIGHQQQDEQTRKQLEMQIKQIEEAKVQLDNERKLVDEQKKSIEKKRKEVE
GKEQKMAELNQQLNKRKEQMDQLEKSLQKAGGSAAATTELSKKLADTQQQLETTMKQLEA
ANEESKRAAAETERLLQLVQMSQEEQNSKEKTIMDLQQALKNAQAKMKAQQQAQAEAANP
AQQAAGFLKSFF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
23 g10656.t1 Coils Coil Coil 7 27 -
26 g10656.t1 Coils Coil Coil 35 62 -
17 g10656.t1 Coils Coil Coil 70 118 -
24 g10656.t1 Coils Coil Coil 133 206 -
28 g10656.t1 Coils Coil Coil 240 267 -
29 g10656.t1 Coils Coil Coil 279 495 -
21 g10656.t1 Coils Coil Coil 503 523 -
27 g10656.t1 Coils Coil Coil 566 642 -
16 g10656.t1 Coils Coil Coil 650 691 -
22 g10656.t1 Coils Coil Coil 706 816 -
25 g10656.t1 Coils Coil Coil 821 858 -
13 g10656.t1 Coils Coil Coil 885 912 -
20 g10656.t1 Coils Coil Coil 934 968 -
14 g10656.t1 Coils Coil Coil 972 1034 -
30 g10656.t1 Coils Coil Coil 1039 1059 -
18 g10656.t1 Coils Coil Coil 1070 1290 -
15 g10656.t1 Coils Coil Coil 1301 1338 -
19 g10656.t1 Coils Coil Coil 1346 1376 -
10 g10656.t1 MobiDBLite mobidb-lite consensus disorder prediction 208 235 -
12 g10656.t1 MobiDBLite mobidb-lite consensus disorder prediction 208 240 -
11 g10656.t1 MobiDBLite mobidb-lite consensus disorder prediction 1275 1305 -
9 g10656.t1 MobiDBLite mobidb-lite consensus disorder prediction 1291 1305 -
3 g10656.t1 PANTHER PTHR18861 ELKS/RAB6-INTERACTING/CAST PROTEIN 2 656 4.1E-194
6 g10656.t1 PANTHER PTHR18861:SF0 BRUCHPILOT, ISOFORM J 2 656 4.1E-194
2 g10656.t1 PANTHER PTHR18861 ELKS/RAB6-INTERACTING/CAST PROTEIN 653 735 4.1E-194
5 g10656.t1 PANTHER PTHR18861:SF0 BRUCHPILOT, ISOFORM J 653 735 4.1E-194
4 g10656.t1 PANTHER PTHR18861 ELKS/RAB6-INTERACTING/CAST PROTEIN 739 1376 4.1E-194
7 g10656.t1 PANTHER PTHR18861:SF0 BRUCHPILOT, ISOFORM J 739 1376 4.1E-194
1 g10656.t1 Pfam PF10174 RIM-binding protein of the cytomatrix active zone 3 296 3.1E-40
8 g10656.t1 SUPERFAMILY SSF57997 Tropomyosin 951 1190 7.85E-5

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed