Gene loci information

Transcript annotation

  • This transcript has been annotated as Glucose dehydrogenase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10717 g10717.t1 isoform g10717.t1 11568204 11570189
chr_1 g10717 g10717.t1 exon g10717.t1.exon1 11568204 11569690
chr_1 g10717 g10717.t1 cds g10717.t1.CDS1 11568204 11569690
chr_1 g10717 g10717.t1 exon g10717.t1.exon2 11569750 11569974
chr_1 g10717 g10717.t1 cds g10717.t1.CDS2 11569750 11569974
chr_1 g10717 g10717.t1 exon g10717.t1.exon3 11570039 11570189
chr_1 g10717 g10717.t1 cds g10717.t1.CDS3 11570039 11570189
chr_1 g10717 g10717.t1 TSS g10717.t1 NA NA
chr_1 g10717 g10717.t1 TTS g10717.t1 NA NA

Sequences

>g10717.t1 Gene=g10717 Length=1863
ATGAAGATAAATATTGTACTGTGTATTTTATTTTTATCAATCTTAAAGATAAACGGTTTT
AGAAAAATCACTGAAGAATTTTTCAAAAATATTCATTTGATAAGTGACATTTCAAGCTAT
AAATTTCGTTTGTTACAAAGAAATATTGAACCTCATGCATATTTTAATGAGTATGACTTT
ATAATTATCGGAAGTGGAGCTGCTGCATGTGTTATCGCAAATAGATTGACAGAAAATAAA
AATTGGAATGTATTGATGATAGAAGCAGGACAAGTTGAAACTGTCATCCAAAATTTTCCA
TTAATGGCATCAGTAAATCAAATGACAACCTATGACTGGAATTATAAATCTGAGAGACAA
ACAAATGCATGTTTAGGTATGAACAATCAAATGTGCAGTTATCCACATGGTAAAGGAATT
GGAGGTTCAACGATTATAAATTATATGGTTTATAATAGAGGACATAGTAATGATTTTGAT
CGATGGGAAGAAGCTGGTAATAAAGGATGGTCTTTTGAGAAAATTAAAAAATATTTTGAA
AAAGCAGAAATGAATTCAATTGGTGACTTGAAAAAGAATTTGTTGAGTAAACAAATTAAT
TTAGCATATAATCCATATAAAACAAAATTGGCTCATACTTTTATCGATGCTCATAAAGAA
TTGGGATTAAGAGAAATAAAATACAATCTTCATTCTAAATCTGGTGTGAGTTATCTGCAA
GCAAGTACGTTGAATGGTTGGAGACATACTGCATTTAGAGCTTTTATCACTGAGATCCTA
AATCGTCCAAATTTTCATATAATGCTTGCTACACATGTTACAAAGATTTTGATAGATCAA
CAAACAAAAACCGCTTATGGAGTAGAATTCGCGAGAAAAGGAAGAAGGTATAAGATGAAG
GCAAGAAAGGAAGTGATTTTATCGGCAGGAACATTTAATTCGCCACAACTTTTAATGCTT
TCCGGAATAGGACCAAAAAATGATTTACAAAAATTAAATATTCCAGTTATTCAAGATTTG
CCAGTTGGTCAAGTTATGTACGATCATTATATATATTTTGGATTATTATTCATAATGAAT
TCTACCGGAAATTCTATTACTATACCAAAAGCTTTCAGTCCATCATCTTTAGCTGCATTT
GCTAATGGTGAAGGTCAGGTTGCTTTTCCCGGTGGAGGTGAAGCATTAAGCTTTATTCAA
ACAAGTTATAACACAAGAGGACTTGATGTGCCTGATGTTGAATTTTTCGAATTGAGCGGA
GGTATTCACACAGACCATGGTATATTATCGAGAAACTATAATTTTAAAAATGAAATTTTT
GATACTTTATATCGACCATTAATTGGAACACGTTTTGACACAATGACACCTGCAATAATA
ACTTTTCATCCTAAATCTGTGGGTTTCATAAAACTAAAAGATAAAAATCCTTTTAGTCAT
CCGCTTATTTTCCCCAATATTTTAACAAATTCAAATGATATAGAAACATATTTGGAAGCA
ATAAAATTTGCAATTTCGCTTTTGAAAACAGAAGCATTCAAAAAACTTGGTGCAAGAGTT
TACTCAGTTTCATTACCAGGTTGCAGTCATATTCATTTTGGTAGTGATGATTATTGGAGG
TGTTCTATTCGTCATATGACATCAACAGTTCATCATCAAACAACTACTTGTAAAATGGGA
AATGCGAAAACAGATAAATATGCAGTTGTGAATAATGAATTAAAAGTTTATGGAATTAAT
AAGCTAAGAGTAGCTGACATTTCAATAGTTCCTGAAACAACTTCGGGCCATACACAAGCA
GTAAGCTATATGATTGGTGAAAAAGCAGCAGATATGATTAAAGATTTATGGATAAAGAAT
TAA

>g10717.t1 Gene=g10717 Length=620
MKINIVLCILFLSILKINGFRKITEEFFKNIHLISDISSYKFRLLQRNIEPHAYFNEYDF
IIIGSGAAACVIANRLTENKNWNVLMIEAGQVETVIQNFPLMASVNQMTTYDWNYKSERQ
TNACLGMNNQMCSYPHGKGIGGSTIINYMVYNRGHSNDFDRWEEAGNKGWSFEKIKKYFE
KAEMNSIGDLKKNLLSKQINLAYNPYKTKLAHTFIDAHKELGLREIKYNLHSKSGVSYLQ
ASTLNGWRHTAFRAFITEILNRPNFHIMLATHVTKILIDQQTKTAYGVEFARKGRRYKMK
ARKEVILSAGTFNSPQLLMLSGIGPKNDLQKLNIPVIQDLPVGQVMYDHYIYFGLLFIMN
STGNSITIPKAFSPSSLAAFANGEGQVAFPGGGEALSFIQTSYNTRGLDVPDVEFFELSG
GIHTDHGILSRNYNFKNEIFDTLYRPLIGTRFDTMTPAIITFHPKSVGFIKLKDKNPFSH
PLIFPNILTNSNDIETYLEAIKFAISLLKTEAFKKLGARVYSVSLPGCSHIHFGSDDYWR
CSIRHMTSTVHHQTTTCKMGNAKTDKYAVVNNELKVYGINKLRVADISIVPETTSGHTQA
VSYMIGEKAADMIKDLWIKN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g10717.t1 Gene3D G3DSA:3.50.50.60 - 58 614 1.1E-162
9 g10717.t1 Gene3D G3DSA:3.30.560.10 Glucose Oxidase 96 551 1.1E-162
3 g10717.t1 PANTHER PTHR11552:SF208 GLUCOSE DEHYDROGENASE [FAD, QUINONE]-LIKE PROTEIN 40 618 7.3E-217
4 g10717.t1 PANTHER PTHR11552 GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE 40 618 7.3E-217
15 g10717.t1 PIRSF PIRSF000137 Alcohol_oxidase 45 620 3.9E-138
1 g10717.t1 Pfam PF00732 GMC oxidoreductase 58 350 3.2E-68
2 g10717.t1 Pfam PF05199 GMC oxidoreductase 464 609 2.3E-32
11 g10717.t1 Phobius SIGNAL_PEPTIDE Signal peptide region 1 19 -
12 g10717.t1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
13 g10717.t1 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 15 -
14 g10717.t1 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 16 19 -
10 g10717.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 20 620 -
17 g10717.t1 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 137 160 -
16 g10717.t1 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 310 324 -
6 g10717.t1 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 56 617 6.96E-74
5 g10717.t1 SUPERFAMILY SSF54373 FAD-linked reductases, C-terminal domain 393 554 2.45E-33
7 g10717.t1 SignalP_EUK SignalP-noTM SignalP-noTM 1 19 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values