General information for g10755.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10755 is located on chr_1: 11730606..11732023 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10755 | g10755.t2 | isoform | g10755.t2 | 11728610 | 11730606 |
| chr_1 | g10755 | g10755.t2 | exon | g10755.t2.exon1 | 11728610 | 11728751 |
| chr_1 | g10755 | g10755.t2 | exon | g10755.t2.exon2 | 11729073 | 11729587 |
| chr_1 | g10755 | g10755.t2 | cds | g10755.t2.CDS1 | 11729266 | 11729586 |
| chr_1 | g10755 | g10755.t2 | exon | g10755.t2.exon3 | 11729885 | 11730606 |
| chr_1 | g10755 | g10755.t2 | TSS | g10755.t2 | NA | NA |
| chr_1 | g10755 | g10755.t2 | TTS | g10755.t2 | NA | NA |
Sequences
>g10755.t2 Gene=g10755 Length=1379
AAATTAGAAATATTTTTTTTATTTTCTCGAAAATTAATTTTCTATTCTTTGGACATAAAC
AGACTCATTCTTCAACTATTTCATTTTTTATTTGAAGTTATCTCTTCTATATGAATTTAA
AAATAAAGAGAGCGAGAGATTCTTGTACACGAGAAAAAGAAAGTTCAGAAAAACGATTTG
TTTACATTTGATTTCTAGCATCATTTTAATGTAAATATTTACATTATTATTACCATCATA
TTCTACAAATTTTACGATTCTTTATTTTTAATTTATGGTTTTTGAATGTGAATAGAGGAA
AAAAGAGAGTGAAAATGATTGTGAGAATTCAATTGCTTCTCTCAATGAATTCACACTGCT
GTGCCTTCTTCTTTTTTTATGACTGGCATGTAAAAAATTTCTTTTAATTATGATAAAACA
GACTTAAAGGTTAACGTCAGTTTTCAACTGCTATTAAAATTATTTCTCTATCAAATAATT
ATTGCTCATGAAAAAAAGCTGTGCTGCTCATCAAACTCACAATTAATTTGCATATTTGTG
CTCGCCATAGTAGCTCGTGCCTGTCGTCGTTGATGATGGCGGCGGTGAAATTGGAGTGTG
CGGATATGGACTTGAAATTGAATGATGTGTCAGAGATGGTTTGCAGTCATTCGACATCAG
CACTGTTGGCGTAGTCGTGGGACTACTTGAAATCATATTCTGCTGTTGCTGCTGAGTCAT
CTAATGACATGTACTTACCTCCATTTTCATATGGCTGATATGCTTGATAATTTCCTGAAT
ATTCCAAAATATTACTCTGTGGTGGGATATGCTGTGTTGGTGATGGATTTCGAACATATT
CAGATGCCTGATATTGCCAAGGTGCATCAGAAAAAGTTGGAGGTGCTGCTTGAACTGATG
AACTTGAATATTCATGCGAATAGTTTGTATATGATGATGGATAGCAATTTGGAATATCGA
CATTTAGTTGCGGTCCATCGTATTGCGATGAAGAATAAAATTGACCAGGACTTGAGTAAC
TTTTCATTTGCTGTTTTCTTCTAAATCCTCTTGGTCGTCTTCGAAGACTTCCTTCATCTT
CAAACATGTACTCTGCACTTGCATCGATTGTCCAATAATGACCTTTTCCTGGCTTTCCAC
ATTCTTTTGGTAATTTTTTAAAACACTCATTTAAACTCAAATTATGACGCACTGAATTTT
TCCAGCCATTATATTCACCGTTGAAAAATGAATATCTTGATTGCAAATATTTGTAAATTT
CACTCAAAGTACGTCTCTTTTGTGGTGAATCTTTTATAGCCATAACAATCATATTAATAT
AGCTCATTGCAGGCTTTTCTGGTTTTCGACCACCAGTTTTTTTCACTGTTGTTTCTGTC
>g10755.t2 Gene=g10755 Length=106
MTCTYLHFHMADMLDNFLNIPKYYSVVGYAVLVMDFEHIQMPDIAKVHQKKLEVLLELMN
LNIHANSLYMMMDSNLEYRHLVAVHRIAMKNKIDQDLSNFSFAVFF
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed