General information for g10762.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Extracellular serine/threonine protein kinase four-jointed.
Parent gene
- The parent gene g10762 is located on chr_1: 11810485..11812131 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10762 | g10762.t1 | isoform | g10762.t1 | 11810485 | 11812131 |
| chr_1 | g10762 | g10762.t1 | exon | g10762.t1.exon1 | 11810485 | 11812131 |
| chr_1 | g10762 | g10762.t1 | cds | g10762.t1.CDS1 | 11810485 | 11812131 |
| chr_1 | g10762 | g10762.t1 | TSS | g10762.t1 | NA | NA |
| chr_1 | g10762 | g10762.t1 | TTS | g10762.t1 | NA | NA |
Sequences
>g10762.t1 Gene=g10762 Length=1647
ATGATTGCCAATGAGTGCCACAAGAATCATCATCGAGAAGTAGCGGAAAATTGCATAAAA
AGTACCGTGAACGACAAGTCAGAGTCAGTTGTCATTGACGATACAATGCTATTGGTTTTG
CGCAAGAAGCGTCGCGCATTCTATCATCAGACGTGTCTATTGAGCGTCATGGCTGCGTTC
ACAATTGGATTAGCCATGGGCATCTTTTTCCTGCCATTAATCAGATTAACATCGGCAAAC
AGTCCAACAATAGCGACTAATAATAATATAGATGGCAAAGTACAAATGCACAAGTACAGT
TTCAACAGCAAATCGAAGTACAATAGTAAAGCTAATCAAATCAACAATTTCGAGTCAGCT
AAGAGGCCAGCAGCCGCTTATTCTTCCGTATCGTTCATATCAGATGATGACAAATATTCA
AAGATCGCAGCGGCATATGAGCCAGTCATAGAGCAAGCAGCAATTGCAACAGAAGATAGA
AACAATAAAAGCACAACTGATGACAACAGCAACAAAATGCAACAAAGTCTTGAGAATTCA
TATGAGCGGGAAAACAATGAGACACTACAACGAATCATCGAAGATGGTATTTATTGGGGT
CAAGCGATTGAGGATCGTATACCGAATGGCTTCAGTAAGCGCGACACACAAGACTGGCAA
AATTATTTGCAAGGAAATATGACAGAGATCATCAAGATAGAGCAGGGTTGTGGTCGTATG
CAAAATCGTCTTGTAACTTTTAGTGATGGAGTTAAAGCTTGTGTTCGATATCGTCAAAAT
ACTGACCAAATTCAAGGCGAACTCTTTAGTTTCTTCCTTGGTCGTCTACTTAATATTACA
AACCTTGTGCCAAGCACAGCAGCCGTCATCGATTGGGATTCACGTTTATGGTTACAAGTA
AAGCAACATATCACTGAGTCGCAATGGAAAACGTCGCGTCCTGTTGTATTTACAAAATGG
ATTCCCGATCTGTTGCCATCTGATATACCGGTACAATTTCGACCACTTGAAAGGCATATG
AATAGAGACGACATATGGAACATGACAATGAGTGACGATGATGGCACAAACAAGCCCTCG
CATGTGCTCATCGATCGATTAAAAACGAAATACGATGACAATGGCAAAATGAAGCTCAAG
AAGAAGAAGAAAATTAGTCTGAATGAGCGAATGTATGAACGTTTTGTTGAGCTCGCTCAA
TGGTCGGATTTAATTGTTTTTGACTATCTAATTGCAAATCTTGATCGAGTTGTCAATAAT
CTTTACAATTATCAATGGAATGCAGACATCATGGCAGCACCAGCACACAATCTTGCTAGA
CAAAAAGACTCACAATTGCTAGTATTCTTGGATAATGAGTCAGGTTTATTACATGGCTAT
CGATTACTTAAAAAGTATGAAGTTTATCATAGTTTGCTATTAGATGAGCTTTGTGTATTT
CGCAAATCGACAATTGAAGCTTTAAGACATCTTCATGAAAATAATGCTGGTGATATTCTT
AATGATATTTTTGAACAAATAACAGGCGACAAAGTTCGAGACGTATTGCCGCCCCTTCCT
GAAAAATCAATAAAAATCCTTTCTGAGAGAATTGAGCATGTTTTACAACAAGTGCAAAAA
TGCCAAGATATGTACTCAAATAGATAG
>g10762.t1 Gene=g10762 Length=548
MIANECHKNHHREVAENCIKSTVNDKSESVVIDDTMLLVLRKKRRAFYHQTCLLSVMAAF
TIGLAMGIFFLPLIRLTSANSPTIATNNNIDGKVQMHKYSFNSKSKYNSKANQINNFESA
KRPAAAYSSVSFISDDDKYSKIAAAYEPVIEQAAIATEDRNNKSTTDDNSNKMQQSLENS
YERENNETLQRIIEDGIYWGQAIEDRIPNGFSKRDTQDWQNYLQGNMTEIIKIEQGCGRM
QNRLVTFSDGVKACVRYRQNTDQIQGELFSFFLGRLLNITNLVPSTAAVIDWDSRLWLQV
KQHITESQWKTSRPVVFTKWIPDLLPSDIPVQFRPLERHMNRDDIWNMTMSDDDGTNKPS
HVLIDRLKTKYDDNGKMKLKKKKKISLNERMYERFVELAQWSDLIVFDYLIANLDRVVNN
LYNYQWNADIMAAPAHNLARQKDSQLLVFLDNESGLLHGYRLLKKYEVYHSLLLDELCVF
RKSTIEALRHLHENNAGDILNDIFEQITGDKVRDVLPPLPEKSIKILSERIEHVLQQVQK
CQDMYSNR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g10762.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 184 | - |
| 12 | g10762.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 183 | - |
| 2 | g10762.t1 | PANTHER | PTHR13147 | FOUR-JOINTED BOX PROTEIN 1 | 45 | 546 | 9.1E-140 |
| 8 | g10762.t1 | PRINTS | PR02072 | Four-jointed box protein 1 signature | 197 | 211 | 4.9E-65 |
| 9 | g10762.t1 | PRINTS | PR02072 | Four-jointed box protein 1 signature | 237 | 254 | 4.9E-65 |
| 7 | g10762.t1 | PRINTS | PR02072 | Four-jointed box protein 1 signature | 254 | 273 | 4.9E-65 |
| 4 | g10762.t1 | PRINTS | PR02072 | Four-jointed box protein 1 signature | 395 | 410 | 4.9E-65 |
| 6 | g10762.t1 | PRINTS | PR02072 | Four-jointed box protein 1 signature | 410 | 426 | 4.9E-65 |
| 3 | g10762.t1 | PRINTS | PR02072 | Four-jointed box protein 1 signature | 446 | 467 | 4.9E-65 |
| 5 | g10762.t1 | PRINTS | PR02072 | Four-jointed box protein 1 signature | 469 | 485 | 4.9E-65 |
| 1 | g10762.t1 | Pfam | PF06702 | Golgi casein kinase, C-terminal, Fam20 | 389 | 546 | 4.0E-6 |
| 13 | g10762.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 50 | - |
| 15 | g10762.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 51 | 74 | - |
| 14 | g10762.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 75 | 548 | - |
| 10 | g10762.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 52 | 74 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K16674 (four-jointed box protein 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed