General information for g10767.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as N-acetylgalactosaminyltransferase 4.
Parent gene
- The parent gene g10767 is located on chr_1: 11873172..11874917 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10767 | g10767.t1 | isoform | g10767.t1 | 11873172 | 11874917 |
| chr_1 | g10767 | g10767.t1 | exon | g10767.t1.exon1 | 11873172 | 11874917 |
| chr_1 | g10767 | g10767.t1 | cds | g10767.t1.CDS1 | 11873172 | 11874917 |
| chr_1 | g10767 | g10767.t1 | TTS | g10767.t1 | 11875610 | 11875610 |
| chr_1 | g10767 | g10767.t1 | TSS | g10767.t1 | NA | NA |
Sequences
>g10767.t1 Gene=g10767 Length=1746
ATGCTCAAACTATCGCAAAGAAAAATTCATTTTTCATTTGTTTGTGCAACATCAATTGTT
ATTTGTATAATTGTACTTCAATATTTGTCATACAATGATGATTTTATTGAAAATGATGAT
GATCAAAGTGAAGAACGACTTATTGATTATAATAATTACGCTTTGATGGAAGAAGAAAAA
ACTCGAATAGGTGCGGGTGAGCACGGTAAGCCAGTCATTCTCGAAAATCAAGATGAAATT
AAAGAGAATGAACGTCTCTATAATCAAACTGGTTTCTATGTGATCGCATCAAATAAAATT
TCGGTAAATCGGTCCATTCCTGACCTACGTTCAACAGAGTGTCGTGCACAAAAATATTCA
TCAGTATTGCCGAAGGTTTCAATAGTCATCATTTTCTACAACGAAGTTTTTTCAATGTTA
AAACGAACATTGCATAGCATTTACAATCGCAGTCCATTACGTTTGATTCGTGAAATTGTT
TTAGTAAATGATGCAAGTACTGAAAGTGAGCTTTATAATGATTTGAAAAAATATGTAAAG
AAAAATTTTGGTAAATTTGTAAAAATTAAAAACTTGAAAGAAAGAAAAGGACTAATTGTG
GCAAGAATGGAAGGAGCAAGAATTGCAAAAGGAGAAATTTTAGTATTTTTAGATGCACAC
GTTGAAGTAAATCACAATTGGCTACCAGCTTTAATCACACCAATTAAAGAAAATCGAAAG
CTTGCAACAGTGCCACTTATTGATGATTTCAGTTCAACAACATTCGAGTATTTTGGAATG
GTTCCAACTCGAGGTGTTTTTGATTGGATGTTTACATTCAGAGAGATAAAACTGAAAAAT
CCTGATACAATAAAATCTTTTCAAGTTCCAATTATGCTTGGCTGTGCTTTTGCTATTGAC
AGAAAATTTTTCCTCAATGATTTACAGGGTTATGACGAAGGATTACAAATATGGAATGGT
GAAAATTATGAATTGAGTTTTAAACTACATTTATGTGCTGATGGAATTTTAAAAATTCCA
TGCAGTCGAGTTGCACACACTTTTCGTGAAATTAACCCAACAAGAGCAAAAAGTTATGAT
TATGTAGCGAGTAATTTTAAAAGAATTGCTGAAGTATGGCTCGATGAATATAAAGAAATT
CTCTATTCAAGACAGCCACAAAGGTTTGAAAAAGCTAAAGCTGGTGATTTAACTAAAGCG
AAAAAAGTTAAAGACAGTTTAAATTGCAAACCATTTAAATATTTTCTCGATGTTGTCGCA
AAAGACTTAGTCGATTTCTATCCACCTCTTTTTCAAATTCCCGTTTTCGCATCTGGTGCT
ATAAAGTCATTAGCAAGTGAGGAAAAATTTTGCTTAACTGGTGTTGGTACAATACAAATC
CCATTGAGACTTGCAAAATGTGACACAAATTTAATTGAACCTAGAGATTTACAGCACTTT
TCATTGACATTTTTCAAACAAATTATTCAAAGTGGAACTGATTTATGTTTAGATGCTTCG
AATTTATCAATCATAGATTGTCATTATGATAAAGGCAATCAGTTCTGGCGATTAGAGGAG
GAGACTGGTCTTTTAAAAAACAATAATGACCATGGAAAATTTTGCATGACGGCAGATATC
AATGAAATGAGAGTCGTTATGGAAATTTGCGATGAGAATAATTCTAATCAGAAATGGACA
TTTGGATACGTAAATGCTACTGCTATGAGGCGATGGAATGAAATTTATGGTTACAAAATT
ATGTAA
>g10767.t1 Gene=g10767 Length=581
MLKLSQRKIHFSFVCATSIVICIIVLQYLSYNDDFIENDDDQSEERLIDYNNYALMEEEK
TRIGAGEHGKPVILENQDEIKENERLYNQTGFYVIASNKISVNRSIPDLRSTECRAQKYS
SVLPKVSIVIIFYNEVFSMLKRTLHSIYNRSPLRLIREIVLVNDASTESELYNDLKKYVK
KNFGKFVKIKNLKERKGLIVARMEGARIAKGEILVFLDAHVEVNHNWLPALITPIKENRK
LATVPLIDDFSSTTFEYFGMVPTRGVFDWMFTFREIKLKNPDTIKSFQVPIMLGCAFAID
RKFFLNDLQGYDEGLQIWNGENYELSFKLHLCADGILKIPCSRVAHTFREINPTRAKSYD
YVASNFKRIAEVWLDEYKEILYSRQPQRFEKAKAGDLTKAKKVKDSLNCKPFKYFLDVVA
KDLVDFYPPLFQIPVFASGAIKSLASEEKFCLTGVGTIQIPLRLAKCDTNLIEPRDLQHF
SLTFFKQIIQSGTDLCLDASNLSIIDCHYDKGNQFWRLEEETGLLKNNNDHGKFCMTADI
NEMRVVMEICDENNSNQKWTFGYVNATAMRRWNEIYGYKIM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g10767.t1 | CDD | cd00161 | RICIN | 488 | 561 | 1.20791E-11 |
| 7 | g10767.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 44 | 430 | 3.3E-133 |
| 6 | g10767.t1 | Gene3D | G3DSA:2.80.10.50 | - | 434 | 575 | 9.9E-20 |
| 3 | g10767.t1 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 15 | 566 | 5.4E-130 |
| 2 | g10767.t1 | Pfam | PF00535 | Glycosyl transferase family 2 | 127 | 302 | 6.1E-27 |
| 1 | g10767.t1 | Pfam | PF00652 | Ricin-type beta-trefoil lectin domain | 438 | 559 | 2.0E-13 |
| 8 | g10767.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 8 | - |
| 10 | g10767.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 9 | 29 | - |
| 9 | g10767.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 30 | 581 | - |
| 14 | g10767.t1 | ProSiteProfiles | PS50231 | Lectin domain of ricin B chain profile. | 478 | 561 | 15.339 |
| 13 | g10767.t1 | SMART | SM00458 | ricin_3 | 438 | 562 | 8.4E-9 |
| 5 | g10767.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 103 | 421 | 7.97E-50 |
| 4 | g10767.t1 | SUPERFAMILY | SSF50370 | Ricin B-like lectins | 434 | 562 | 3.17E-18 |
| 12 | g10767.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 9 | 31 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
