Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_1 | g10770 | g10770.t1 | isoform | g10770.t1 | 11881363 | 11888391 |
chr_1 | g10770 | g10770.t1 | exon | g10770.t1.exon1 | 11881363 | 11882986 |
chr_1 | g10770 | g10770.t1 | cds | g10770.t1.CDS1 | 11881363 | 11882986 |
chr_1 | g10770 | g10770.t1 | exon | g10770.t1.exon2 | 11883554 | 11885248 |
chr_1 | g10770 | g10770.t1 | cds | g10770.t1.CDS2 | 11883554 | 11885248 |
chr_1 | g10770 | g10770.t1 | exon | g10770.t1.exon3 | 11886728 | 11888391 |
chr_1 | g10770 | g10770.t1 | cds | g10770.t1.CDS3 | 11886728 | 11888391 |
chr_1 | g10770 | g10770.t1 | TSS | g10770.t1 | NA | NA |
chr_1 | g10770 | g10770.t1 | TTS | g10770.t1 | NA | NA |
>g10770.t1 Gene=g10770 Length=4983
ATGTTCTGGTTGAAAGTTTTATTTTTCGTTAAGCTCTGCTTAATTTTTTATTGCAAAGGA
GATCAAGAAAATATTTCACAACTAGCAAGTGCAATTGAAATTTTTATTAACGAAATTATA
CAAAAAGGAGATGAGGAAATAATTGATTTTATAAAAATTGTTGAAAATGAAAAAAACGGA
AAACTAATTGATTTAGAAAATGAAATCCTCAAAAGAATTTCACGTGCAGTTTGTCTTAGA
ATTGATGATTATTTGCACATGACAACTTCAAAATTGCGTGTCAGGCATATCAACATAATT
TATTTGGAAAAAATTGAATTGTTTTATGAATTCGAAAAATCTCTTATGAGTTATCAATTC
AGTTTTTATGGCTATTATATTTTCATTCTTTATAAAGGACATTGGAATAATATTCAAGAA
ATTTTTGATGAATTGTGGAATAAAAGAATTTATAATATATATGTATTTCATGAAAATGAA
ACAGAAATTGATTTAATCACTTTTAATCCACTTGGAAATTCTAAAAATTGTAATGACATA
AAAATGAATGTAGTGAACAAATTTATTAATGGGAAATTTATGCATTCAAAATTATTATAT
TATAAGTTGAAAAATTTACAAGGATGTCCATTGAGAGTCGTAACTTTAAATGAGCATTTT
GATGTTACAAAAATAAAGCATTCAAATGGAACAATTGAATATATTGGGCATGCAATTGAT
TTGATGAATGCCGTAGCTGAAGCATTAAACTTTAGGCCAATTATTGATCTAATTGAAGAT
GGAAATAAATGGGGAGACATTTACAAAAATGGAACAGCTACAGGAACGGTTGGAAAATTG
CTTAATAAAGAATGTGAAATTGCTTTTGGTGATTGGTTTTTGTTACCAGATAGAACAAAA
ATTTTTGATAATTCATTAGCCCATGGATCTACTCAACTAGTATTTTTAATCCCGCCAGCA
AAACATTTTACTTCAATCGAAAATTTAGTACGACCATTTCATTGGATTGTTTGGATTTTA
TTTGTTTTGACATTTTTGATCGGACTTTTGACAATTTTGATCATTAATGTCAAATTCAAA
AAATTGAAATCATTTGTTTATGGACGAAATGTAAAATATCCAACCATGAATATGTTTTCA
GCTATTTTTGGAATGCAACAGAATATTTTACCAAAAAGAAATTTTGCACGCTTCCTACTC
ATGTTATTTTTAATTTTTTGCCTGATCCTAAGAAGCATTTATCAAGGAGCACTCTTTGAA
TTTTTACAATTAGATGATCGACACAAACAAATCAAAACATTGAAATCACTTTTTAAAAGT
AATTTACAAATTTACACTTATGATTATTTTGACATTATTATAAATGACAGCATGCCAGAA
CTTTTTAAAAAAATCAAACATGTTTATGATCACAATAATTTTATAATTCAACCTCTCAAG
GAAACAGACGAAAAAGCAGGTCTTGAAAATTTAAAATACATAATTTATGAGAACCGTAAA
AAACGTCAAAATTTTCTTCATTATTGTAAAGAAGAATTTCTTACAATCAGCTATGTTTGG
TATTTTCCAAAAAAATCTTATCTTATTAAAAAGGTTAATAGGAAAATTGAAGCATTTATT
GAAGTTCAAAATCTAAATTTGGAAATAGAAAATAAAAATATTAAAAGTGATTTTATTGAT
GCAGCAAATATTTTAGTCAAGAAAATGATCAAATTTAGTTATAAAACTATCAATATTATA
ACAGCTGTCAATAAATCTGCAGAATTTCGATTATCACTTTTGAAAACTGAAATACTAAAA
AGAAATGGAATAACTTATGGAGTGAAAATCTGCAATTCTATGAAAATTCCTAATGAATTT
CCACTAAAGAAAAGATTTATAATTTTTATGCTGGATAATTATGAAAATTTTCAAAAATTA
ATTAAAAAGATCACAAATCAAAAGTTTAATTTTAGAGGAATTTTTGTCTTCATTATGGTC
AATGGTTTTATACAAGAAATTGATGAAATTTATGAGAAAATGTGGTCAAAAAGTGTAAGC
AATATTTATTCATTGCATGAAACCAAAACTGGTGAAATTTATTTATCAACAATAAATTTA
TTTGAAAATGCATCAAATTGCTATGATATAAAACCAAAAATAGTCAATCAATTTGTCAAT
GGAACTTTTCTAAATGAAATCAATTTTTTTGCTGATAAATTTTCTCAAATGAATAATTGT
TCCATTAGAGTGACCACATTTGAAGATAAAACAATAATGAAAATTATTGATTATCCAAAT
GGTACAATTGAGGTCAAAGGACCATGCATGAAACTTTTAGAAATGATTGCACAACAATTA
AATTTTAGTTTTAGTCTAAATATCTTAAGAGAACCATCGCCATGGGGTTTTATTCATAAA
AATGGTACTCTGACAGGTGCATTGAAAGAACTGAGTGAAAATTCAACAGATATTTCACTT
GGACTTTATTATTTGAGATTAAATCGAATGCAAAGATTTGATAAAAGTACGATATTGTTT
TCTACTCCACTTGTGATGGTTTTACCACCTAACAGACGTTTTACATCATTAGAAAAATTA
GTGCAACCATTTCATTGGATTATTTGGTTCTTTCTTTTAATTACCTTCTTGGCTGGATTT
TTCGTCATAATTTTAATCAATTTTAAACTTAAATATTTTAAATTTTTAATTTATGGTGAA
AATATCTCAAGCCCAACATTGAATATGATCGCTGCAATTTTTGGCTTAAGTCAACCGAAA
TTACCGAAAAAAAATTTTGCAAGAATTTTACTTATGTCATTTCTACTATTTTGTCTTATT
ATAAGAAACACTTATCAAGGACTTCTTTTTAAATTCCTACAATCAGATGGGCGACATAAA
GGAATTCAATCATTAGAAGAAATTTTTAAACAAAATTTTACAATTTACATTTATGAATCA
GAAATGGATTTATTTCAGAAGATTCGTATTCCAATTAAATTTTTTGAAAATGAAAACTTT
CTTCTTAATCGATCACTTCAGGAAAATGAAAAAGTTGCAGTAATTGATGCATTGATTGAT
ATTATTGTAATGAATGAAAGAAATAAAAACAAATTTCAACATAAATTATTTAAAGAACCA
TTGATAACCACTAGTTTGGTATTTTATATGCGAAGACATTTTTTTCTGTCAACATCAATC
AATAACAAAATTGACGTCATATTATCAAGTGGATTTTTGGAATATTGGATGAAAAACACA
ATAAATTATGAAACTGCTATTGCTTCAAGAAAAAGATTAAATGAGGAACCAAAAGCTATA
AATATTGATGAATTAAAAGGCTACAATTTTATTTCATTAGAAAGCGATAAATATGGAGAC
GACGCACATCAAAATTTGAAAACGGAAATTTTGAAAAAAATATCAAAGGTTCGAGCTGTC
AGAATTATCAATAAAGAAAATGGATTTAATTTAAAAGACTTCAAAAGATTTTCAATTTTA
TTTATTCACAATTTGAATGAGTTTAAGAAATTTGAAAAATATATTAATGCTCAAACATTT
AAAGGTTCAGGATTTCATTTAATATTTTTACTACATGGAAACTTAAATGACTTGCATGAA
ATATTTGCATCAATGTGGATAAGAAAAATTTTCAATATTTATGCAATATTATGCAATAAT
GCTGAGGATAAACTTGACTTCTATACTATTGAGCCATTTCAAAATTTTCAAAATTGTGGC
GATACTACACCAAAATTATTAAATAAGTTTATCAACGATAATTTTCTTTATGAATTATTG
ATCAAAGAAAAATTTCACAATTTAAATAAATGTCCAATTAAAGTTACAACATTTAATGAA
AATATTGCAGTATTTAGAGAGATTAAATCAAATGGTAAAATAGAACTACGTGGATATGAA
ATTCATTTGATTAAAACTATTGCAAAAAGTTTAAATTTTACTCTTCAAATAAATTTTCGT
GAAGGAAATGAACAATTTGGAAAAATATATGAAAATGGAACAGCAACAGAAACTTTAGGC
GAGCTTCAAAAAGGAAACACAAACATTGCTTTGGGAGATTTTTATATAAGAATAAGTCGG
CTAGAATACTTTGATTGCAGTGAAACATATTTAAATTATCCAATTGTATTTATCATTTCG
AAAGGTGAAAAATTGTCACCATTAGAAAAAATGCTGCAGCCGTTCGGAACAATTGTGTGG
ATTTTATTTCTACTTACCTTTCTATTGGGTGTTTTAGTGATTTTTATCATAAATTTAAAG
TACAAAAAATTAAAATCATTTGTTTATGGTAAAAATGTTAAAAATCCAGTAATGAATATG
TTAGTTATAACTTTAGGTTCACAGCAAAATATTTTGCCACGAAACAATTTTGCTCGTTTT
ATTTTAATAAATTTTATAATTCTTTGTCTTGTTTTGAGAAGCATTTATCAAGGATCACTT
TACAAATTTCTCCAATCAGATGGACGTTATAAAGAAGTTGAAACAATTGAAGAACTTATT
GACAAAAATTTTACACTTTTGATTCATGAAAGCAATATTGAAATTTTAACAGATTACCCA
AAGCTTCTTAAACAATCACAACTCATCAAACGAGATGTAGTCAAAGATTCTTTAGATAAA
ATGATGTCATCTTCTAAAAAAGTCACAATACTTGGAACTCGAGTCATTTTCATAGATTAT
AGTCGTGACCATAGAACATTTCCATATAAACTTTTAAAGGAAAATCTAATGACTATAAGT
GTTGTAATGTATTATCAAAAGGATTTTTATCTTAAAGATGCAATTAATTCAAAAATAAGA
AGAATTGTAGCTGGTGGACTCGTAAATTATTGGTTAAAAGAATTTGATCATATCGATATG
TGGAATAATGAAAACTTTGAACCGAAAGTTTTGACTTTCGATCATATGATTGGTGCATTT
GGTTTATTAATTATTGGAAATGTCCTTGCATTATTGATATTTATCATTGAAATTTTAATT
TAA
>g10770.t1 Gene=g10770 Length=1660
MFWLKVLFFVKLCLIFYCKGDQENISQLASAIEIFINEIIQKGDEEIIDFIKIVENEKNG
KLIDLENEILKRISRAVCLRIDDYLHMTTSKLRVRHINIIYLEKIELFYEFEKSLMSYQF
SFYGYYIFILYKGHWNNIQEIFDELWNKRIYNIYVFHENETEIDLITFNPLGNSKNCNDI
KMNVVNKFINGKFMHSKLLYYKLKNLQGCPLRVVTLNEHFDVTKIKHSNGTIEYIGHAID
LMNAVAEALNFRPIIDLIEDGNKWGDIYKNGTATGTVGKLLNKECEIAFGDWFLLPDRTK
IFDNSLAHGSTQLVFLIPPAKHFTSIENLVRPFHWIVWILFVLTFLIGLLTILIINVKFK
KLKSFVYGRNVKYPTMNMFSAIFGMQQNILPKRNFARFLLMLFLIFCLILRSIYQGALFE
FLQLDDRHKQIKTLKSLFKSNLQIYTYDYFDIIINDSMPELFKKIKHVYDHNNFIIQPLK
ETDEKAGLENLKYIIYENRKKRQNFLHYCKEEFLTISYVWYFPKKSYLIKKVNRKIEAFI
EVQNLNLEIENKNIKSDFIDAANILVKKMIKFSYKTINIITAVNKSAEFRLSLLKTEILK
RNGITYGVKICNSMKIPNEFPLKKRFIIFMLDNYENFQKLIKKITNQKFNFRGIFVFIMV
NGFIQEIDEIYEKMWSKSVSNIYSLHETKTGEIYLSTINLFENASNCYDIKPKIVNQFVN
GTFLNEINFFADKFSQMNNCSIRVTTFEDKTIMKIIDYPNGTIEVKGPCMKLLEMIAQQL
NFSFSLNILREPSPWGFIHKNGTLTGALKELSENSTDISLGLYYLRLNRMQRFDKSTILF
STPLVMVLPPNRRFTSLEKLVQPFHWIIWFFLLITFLAGFFVIILINFKLKYFKFLIYGE
NISSPTLNMIAAIFGLSQPKLPKKNFARILLMSFLLFCLIIRNTYQGLLFKFLQSDGRHK
GIQSLEEIFKQNFTIYIYESEMDLFQKIRIPIKFFENENFLLNRSLQENEKVAVIDALID
IIVMNERNKNKFQHKLFKEPLITTSLVFYMRRHFFLSTSINNKIDVILSSGFLEYWMKNT
INYETAIASRKRLNEEPKAINIDELKGYNFISLESDKYGDDAHQNLKTEILKKISKVRAV
RIINKENGFNLKDFKRFSILFIHNLNEFKKFEKYINAQTFKGSGFHLIFLLHGNLNDLHE
IFASMWIRKIFNIYAILCNNAEDKLDFYTIEPFQNFQNCGDTTPKLLNKFINDNFLYELL
IKEKFHNLNKCPIKVTTFNENIAVFREIKSNGKIELRGYEIHLIKTIAKSLNFTLQINFR
EGNEQFGKIYENGTATETLGELQKGNTNIALGDFYIRISRLEYFDCSETYLNYPIVFIIS
KGEKLSPLEKMLQPFGTIVWILFLLTFLLGVLVIFIINLKYKKLKSFVYGKNVKNPVMNM
LVITLGSQQNILPRNNFARFILINFIILCLVLRSIYQGSLYKFLQSDGRYKEVETIEELI
DKNFTLLIHESNIEILTDYPKLLKQSQLIKRDVVKDSLDKMMSSSKKVTILGTRVIFIDY
SRDHRTFPYKLLKENLMTISVVMYYQKDFYLKDAINSKIRRIVAGGLVNYWLKEFDHIDM
WNNENFEPKVLTFDHMIGAFGLLIIGNVLALLIFIIEILI
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
22 | g10770.t1 | Coils | Coil | Coil | 1660 | 1660 | - |
20 | g10770.t1 | Gene3D | G3DSA:3.40.190.10 | - | 233 | 546 | 2.5E-35 |
17 | g10770.t1 | Gene3D | G3DSA:3.40.190.10 | - | 312 | 518 | 2.5E-35 |
15 | g10770.t1 | Gene3D | G3DSA:1.10.287.70 | - | 321 | 428 | 2.5E-35 |
21 | g10770.t1 | Gene3D | G3DSA:3.40.190.10 | - | 764 | 1098 | 4.1E-30 |
19 | g10770.t1 | Gene3D | G3DSA:3.40.190.10 | - | 843 | 1046 | 4.1E-30 |
13 | g10770.t1 | Gene3D | G3DSA:1.10.287.70 | - | 852 | 1109 | 4.1E-30 |
18 | g10770.t1 | Gene3D | G3DSA:3.40.190.10 | - | 1296 | 1629 | 9.0E-43 |
16 | g10770.t1 | Gene3D | G3DSA:3.40.190.10 | - | 1374 | 1581 | 9.0E-43 |
14 | g10770.t1 | Gene3D | G3DSA:1.10.287.70 | - | 1384 | 1657 | 9.0E-43 |
4 | g10770.t1 | PANTHER | PTHR42643:SF16 | IONOTROPIC RECEPTOR 11A-RELATED | 150 | 539 | 1.5E-171 |
7 | g10770.t1 | PANTHER | PTHR42643 | IONOTROPIC RECEPTOR 20A-RELATED | 150 | 539 | 1.5E-171 |
3 | g10770.t1 | PANTHER | PTHR42643:SF16 | IONOTROPIC RECEPTOR 11A-RELATED | 624 | 1107 | 1.5E-171 |
6 | g10770.t1 | PANTHER | PTHR42643 | IONOTROPIC RECEPTOR 20A-RELATED | 624 | 1107 | 1.5E-171 |
5 | g10770.t1 | PANTHER | PTHR42643:SF16 | IONOTROPIC RECEPTOR 11A-RELATED | 1225 | 1659 | 1.5E-171 |
8 | g10770.t1 | PANTHER | PTHR42643 | IONOTROPIC RECEPTOR 20A-RELATED | 1225 | 1659 | 1.5E-171 |
1 | g10770.t1 | Pfam | PF10613 | Ligated ion channel L-glutamate- and glycine-binding site | 223 | 311 | 3.7E-7 |
2 | g10770.t1 | Pfam | PF10613 | Ligated ion channel L-glutamate- and glycine-binding site | 1287 | 1381 | 5.8E-9 |
31 | g10770.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
32 | g10770.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
33 | g10770.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 16 | - |
41 | g10770.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 17 | 20 | - |
30 | g10770.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 334 | - |
39 | g10770.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 335 | 355 | - |
24 | g10770.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 356 | 394 | - |
35 | g10770.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 395 | 414 | - |
29 | g10770.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 415 | 865 | - |
36 | g10770.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 866 | 888 | - |
23 | g10770.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 889 | 925 | - |
34 | g10770.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 926 | 945 | - |
28 | g10770.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 946 | 1397 | - |
40 | g10770.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1398 | 1419 | - |
26 | g10770.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1420 | 1456 | - |
37 | g10770.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1457 | 1476 | - |
27 | g10770.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1477 | 1635 | - |
38 | g10770.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1636 | 1659 | - |
25 | g10770.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1660 | 1660 | - |
51 | g10770.t1 | SMART | SM00918 | Lig_chan_Glu_bd_2 | 219 | 282 | 0.02 |
49 | g10770.t1 | SMART | SM00918 | Lig_chan_Glu_bd_2 | 752 | 813 | 0.38 |
50 | g10770.t1 | SMART | SM00918 | Lig_chan_Glu_bd_2 | 1282 | 1344 | 0.026 |
11 | g10770.t1 | SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | 207 | 541 | 1.09E-18 |
10 | g10770.t1 | SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | 756 | 1079 | 5.43E-17 |
9 | g10770.t1 | SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | 1269 | 1613 | 7.93E-20 |
12 | g10770.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
44 | g10770.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 335 | 357 | - |
43 | g10770.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 395 | 414 | - |
46 | g10770.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 866 | 888 | - |
42 | g10770.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 926 | 945 | - |
48 | g10770.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1397 | 1419 | - |
47 | g10770.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1457 | 1476 | - |
45 | g10770.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1637 | 1659 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0016020 | membrane | CC |
GO:0004970 | ionotropic glutamate receptor activity | MF |
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed