Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10770 g10770.t1 isoform g10770.t1 11881363 11888391
chr_1 g10770 g10770.t1 exon g10770.t1.exon1 11881363 11882986
chr_1 g10770 g10770.t1 cds g10770.t1.CDS1 11881363 11882986
chr_1 g10770 g10770.t1 exon g10770.t1.exon2 11883554 11885248
chr_1 g10770 g10770.t1 cds g10770.t1.CDS2 11883554 11885248
chr_1 g10770 g10770.t1 exon g10770.t1.exon3 11886728 11888391
chr_1 g10770 g10770.t1 cds g10770.t1.CDS3 11886728 11888391
chr_1 g10770 g10770.t1 TSS g10770.t1 NA NA
chr_1 g10770 g10770.t1 TTS g10770.t1 NA NA

Sequences

>g10770.t1 Gene=g10770 Length=4983
ATGTTCTGGTTGAAAGTTTTATTTTTCGTTAAGCTCTGCTTAATTTTTTATTGCAAAGGA
GATCAAGAAAATATTTCACAACTAGCAAGTGCAATTGAAATTTTTATTAACGAAATTATA
CAAAAAGGAGATGAGGAAATAATTGATTTTATAAAAATTGTTGAAAATGAAAAAAACGGA
AAACTAATTGATTTAGAAAATGAAATCCTCAAAAGAATTTCACGTGCAGTTTGTCTTAGA
ATTGATGATTATTTGCACATGACAACTTCAAAATTGCGTGTCAGGCATATCAACATAATT
TATTTGGAAAAAATTGAATTGTTTTATGAATTCGAAAAATCTCTTATGAGTTATCAATTC
AGTTTTTATGGCTATTATATTTTCATTCTTTATAAAGGACATTGGAATAATATTCAAGAA
ATTTTTGATGAATTGTGGAATAAAAGAATTTATAATATATATGTATTTCATGAAAATGAA
ACAGAAATTGATTTAATCACTTTTAATCCACTTGGAAATTCTAAAAATTGTAATGACATA
AAAATGAATGTAGTGAACAAATTTATTAATGGGAAATTTATGCATTCAAAATTATTATAT
TATAAGTTGAAAAATTTACAAGGATGTCCATTGAGAGTCGTAACTTTAAATGAGCATTTT
GATGTTACAAAAATAAAGCATTCAAATGGAACAATTGAATATATTGGGCATGCAATTGAT
TTGATGAATGCCGTAGCTGAAGCATTAAACTTTAGGCCAATTATTGATCTAATTGAAGAT
GGAAATAAATGGGGAGACATTTACAAAAATGGAACAGCTACAGGAACGGTTGGAAAATTG
CTTAATAAAGAATGTGAAATTGCTTTTGGTGATTGGTTTTTGTTACCAGATAGAACAAAA
ATTTTTGATAATTCATTAGCCCATGGATCTACTCAACTAGTATTTTTAATCCCGCCAGCA
AAACATTTTACTTCAATCGAAAATTTAGTACGACCATTTCATTGGATTGTTTGGATTTTA
TTTGTTTTGACATTTTTGATCGGACTTTTGACAATTTTGATCATTAATGTCAAATTCAAA
AAATTGAAATCATTTGTTTATGGACGAAATGTAAAATATCCAACCATGAATATGTTTTCA
GCTATTTTTGGAATGCAACAGAATATTTTACCAAAAAGAAATTTTGCACGCTTCCTACTC
ATGTTATTTTTAATTTTTTGCCTGATCCTAAGAAGCATTTATCAAGGAGCACTCTTTGAA
TTTTTACAATTAGATGATCGACACAAACAAATCAAAACATTGAAATCACTTTTTAAAAGT
AATTTACAAATTTACACTTATGATTATTTTGACATTATTATAAATGACAGCATGCCAGAA
CTTTTTAAAAAAATCAAACATGTTTATGATCACAATAATTTTATAATTCAACCTCTCAAG
GAAACAGACGAAAAAGCAGGTCTTGAAAATTTAAAATACATAATTTATGAGAACCGTAAA
AAACGTCAAAATTTTCTTCATTATTGTAAAGAAGAATTTCTTACAATCAGCTATGTTTGG
TATTTTCCAAAAAAATCTTATCTTATTAAAAAGGTTAATAGGAAAATTGAAGCATTTATT
GAAGTTCAAAATCTAAATTTGGAAATAGAAAATAAAAATATTAAAAGTGATTTTATTGAT
GCAGCAAATATTTTAGTCAAGAAAATGATCAAATTTAGTTATAAAACTATCAATATTATA
ACAGCTGTCAATAAATCTGCAGAATTTCGATTATCACTTTTGAAAACTGAAATACTAAAA
AGAAATGGAATAACTTATGGAGTGAAAATCTGCAATTCTATGAAAATTCCTAATGAATTT
CCACTAAAGAAAAGATTTATAATTTTTATGCTGGATAATTATGAAAATTTTCAAAAATTA
ATTAAAAAGATCACAAATCAAAAGTTTAATTTTAGAGGAATTTTTGTCTTCATTATGGTC
AATGGTTTTATACAAGAAATTGATGAAATTTATGAGAAAATGTGGTCAAAAAGTGTAAGC
AATATTTATTCATTGCATGAAACCAAAACTGGTGAAATTTATTTATCAACAATAAATTTA
TTTGAAAATGCATCAAATTGCTATGATATAAAACCAAAAATAGTCAATCAATTTGTCAAT
GGAACTTTTCTAAATGAAATCAATTTTTTTGCTGATAAATTTTCTCAAATGAATAATTGT
TCCATTAGAGTGACCACATTTGAAGATAAAACAATAATGAAAATTATTGATTATCCAAAT
GGTACAATTGAGGTCAAAGGACCATGCATGAAACTTTTAGAAATGATTGCACAACAATTA
AATTTTAGTTTTAGTCTAAATATCTTAAGAGAACCATCGCCATGGGGTTTTATTCATAAA
AATGGTACTCTGACAGGTGCATTGAAAGAACTGAGTGAAAATTCAACAGATATTTCACTT
GGACTTTATTATTTGAGATTAAATCGAATGCAAAGATTTGATAAAAGTACGATATTGTTT
TCTACTCCACTTGTGATGGTTTTACCACCTAACAGACGTTTTACATCATTAGAAAAATTA
GTGCAACCATTTCATTGGATTATTTGGTTCTTTCTTTTAATTACCTTCTTGGCTGGATTT
TTCGTCATAATTTTAATCAATTTTAAACTTAAATATTTTAAATTTTTAATTTATGGTGAA
AATATCTCAAGCCCAACATTGAATATGATCGCTGCAATTTTTGGCTTAAGTCAACCGAAA
TTACCGAAAAAAAATTTTGCAAGAATTTTACTTATGTCATTTCTACTATTTTGTCTTATT
ATAAGAAACACTTATCAAGGACTTCTTTTTAAATTCCTACAATCAGATGGGCGACATAAA
GGAATTCAATCATTAGAAGAAATTTTTAAACAAAATTTTACAATTTACATTTATGAATCA
GAAATGGATTTATTTCAGAAGATTCGTATTCCAATTAAATTTTTTGAAAATGAAAACTTT
CTTCTTAATCGATCACTTCAGGAAAATGAAAAAGTTGCAGTAATTGATGCATTGATTGAT
ATTATTGTAATGAATGAAAGAAATAAAAACAAATTTCAACATAAATTATTTAAAGAACCA
TTGATAACCACTAGTTTGGTATTTTATATGCGAAGACATTTTTTTCTGTCAACATCAATC
AATAACAAAATTGACGTCATATTATCAAGTGGATTTTTGGAATATTGGATGAAAAACACA
ATAAATTATGAAACTGCTATTGCTTCAAGAAAAAGATTAAATGAGGAACCAAAAGCTATA
AATATTGATGAATTAAAAGGCTACAATTTTATTTCATTAGAAAGCGATAAATATGGAGAC
GACGCACATCAAAATTTGAAAACGGAAATTTTGAAAAAAATATCAAAGGTTCGAGCTGTC
AGAATTATCAATAAAGAAAATGGATTTAATTTAAAAGACTTCAAAAGATTTTCAATTTTA
TTTATTCACAATTTGAATGAGTTTAAGAAATTTGAAAAATATATTAATGCTCAAACATTT
AAAGGTTCAGGATTTCATTTAATATTTTTACTACATGGAAACTTAAATGACTTGCATGAA
ATATTTGCATCAATGTGGATAAGAAAAATTTTCAATATTTATGCAATATTATGCAATAAT
GCTGAGGATAAACTTGACTTCTATACTATTGAGCCATTTCAAAATTTTCAAAATTGTGGC
GATACTACACCAAAATTATTAAATAAGTTTATCAACGATAATTTTCTTTATGAATTATTG
ATCAAAGAAAAATTTCACAATTTAAATAAATGTCCAATTAAAGTTACAACATTTAATGAA
AATATTGCAGTATTTAGAGAGATTAAATCAAATGGTAAAATAGAACTACGTGGATATGAA
ATTCATTTGATTAAAACTATTGCAAAAAGTTTAAATTTTACTCTTCAAATAAATTTTCGT
GAAGGAAATGAACAATTTGGAAAAATATATGAAAATGGAACAGCAACAGAAACTTTAGGC
GAGCTTCAAAAAGGAAACACAAACATTGCTTTGGGAGATTTTTATATAAGAATAAGTCGG
CTAGAATACTTTGATTGCAGTGAAACATATTTAAATTATCCAATTGTATTTATCATTTCG
AAAGGTGAAAAATTGTCACCATTAGAAAAAATGCTGCAGCCGTTCGGAACAATTGTGTGG
ATTTTATTTCTACTTACCTTTCTATTGGGTGTTTTAGTGATTTTTATCATAAATTTAAAG
TACAAAAAATTAAAATCATTTGTTTATGGTAAAAATGTTAAAAATCCAGTAATGAATATG
TTAGTTATAACTTTAGGTTCACAGCAAAATATTTTGCCACGAAACAATTTTGCTCGTTTT
ATTTTAATAAATTTTATAATTCTTTGTCTTGTTTTGAGAAGCATTTATCAAGGATCACTT
TACAAATTTCTCCAATCAGATGGACGTTATAAAGAAGTTGAAACAATTGAAGAACTTATT
GACAAAAATTTTACACTTTTGATTCATGAAAGCAATATTGAAATTTTAACAGATTACCCA
AAGCTTCTTAAACAATCACAACTCATCAAACGAGATGTAGTCAAAGATTCTTTAGATAAA
ATGATGTCATCTTCTAAAAAAGTCACAATACTTGGAACTCGAGTCATTTTCATAGATTAT
AGTCGTGACCATAGAACATTTCCATATAAACTTTTAAAGGAAAATCTAATGACTATAAGT
GTTGTAATGTATTATCAAAAGGATTTTTATCTTAAAGATGCAATTAATTCAAAAATAAGA
AGAATTGTAGCTGGTGGACTCGTAAATTATTGGTTAAAAGAATTTGATCATATCGATATG
TGGAATAATGAAAACTTTGAACCGAAAGTTTTGACTTTCGATCATATGATTGGTGCATTT
GGTTTATTAATTATTGGAAATGTCCTTGCATTATTGATATTTATCATTGAAATTTTAATT
TAA

>g10770.t1 Gene=g10770 Length=1660
MFWLKVLFFVKLCLIFYCKGDQENISQLASAIEIFINEIIQKGDEEIIDFIKIVENEKNG
KLIDLENEILKRISRAVCLRIDDYLHMTTSKLRVRHINIIYLEKIELFYEFEKSLMSYQF
SFYGYYIFILYKGHWNNIQEIFDELWNKRIYNIYVFHENETEIDLITFNPLGNSKNCNDI
KMNVVNKFINGKFMHSKLLYYKLKNLQGCPLRVVTLNEHFDVTKIKHSNGTIEYIGHAID
LMNAVAEALNFRPIIDLIEDGNKWGDIYKNGTATGTVGKLLNKECEIAFGDWFLLPDRTK
IFDNSLAHGSTQLVFLIPPAKHFTSIENLVRPFHWIVWILFVLTFLIGLLTILIINVKFK
KLKSFVYGRNVKYPTMNMFSAIFGMQQNILPKRNFARFLLMLFLIFCLILRSIYQGALFE
FLQLDDRHKQIKTLKSLFKSNLQIYTYDYFDIIINDSMPELFKKIKHVYDHNNFIIQPLK
ETDEKAGLENLKYIIYENRKKRQNFLHYCKEEFLTISYVWYFPKKSYLIKKVNRKIEAFI
EVQNLNLEIENKNIKSDFIDAANILVKKMIKFSYKTINIITAVNKSAEFRLSLLKTEILK
RNGITYGVKICNSMKIPNEFPLKKRFIIFMLDNYENFQKLIKKITNQKFNFRGIFVFIMV
NGFIQEIDEIYEKMWSKSVSNIYSLHETKTGEIYLSTINLFENASNCYDIKPKIVNQFVN
GTFLNEINFFADKFSQMNNCSIRVTTFEDKTIMKIIDYPNGTIEVKGPCMKLLEMIAQQL
NFSFSLNILREPSPWGFIHKNGTLTGALKELSENSTDISLGLYYLRLNRMQRFDKSTILF
STPLVMVLPPNRRFTSLEKLVQPFHWIIWFFLLITFLAGFFVIILINFKLKYFKFLIYGE
NISSPTLNMIAAIFGLSQPKLPKKNFARILLMSFLLFCLIIRNTYQGLLFKFLQSDGRHK
GIQSLEEIFKQNFTIYIYESEMDLFQKIRIPIKFFENENFLLNRSLQENEKVAVIDALID
IIVMNERNKNKFQHKLFKEPLITTSLVFYMRRHFFLSTSINNKIDVILSSGFLEYWMKNT
INYETAIASRKRLNEEPKAINIDELKGYNFISLESDKYGDDAHQNLKTEILKKISKVRAV
RIINKENGFNLKDFKRFSILFIHNLNEFKKFEKYINAQTFKGSGFHLIFLLHGNLNDLHE
IFASMWIRKIFNIYAILCNNAEDKLDFYTIEPFQNFQNCGDTTPKLLNKFINDNFLYELL
IKEKFHNLNKCPIKVTTFNENIAVFREIKSNGKIELRGYEIHLIKTIAKSLNFTLQINFR
EGNEQFGKIYENGTATETLGELQKGNTNIALGDFYIRISRLEYFDCSETYLNYPIVFIIS
KGEKLSPLEKMLQPFGTIVWILFLLTFLLGVLVIFIINLKYKKLKSFVYGKNVKNPVMNM
LVITLGSQQNILPRNNFARFILINFIILCLVLRSIYQGSLYKFLQSDGRYKEVETIEELI
DKNFTLLIHESNIEILTDYPKLLKQSQLIKRDVVKDSLDKMMSSSKKVTILGTRVIFIDY
SRDHRTFPYKLLKENLMTISVVMYYQKDFYLKDAINSKIRRIVAGGLVNYWLKEFDHIDM
WNNENFEPKVLTFDHMIGAFGLLIIGNVLALLIFIIEILI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
22 g10770.t1 Coils Coil Coil 1660 1660 -
20 g10770.t1 Gene3D G3DSA:3.40.190.10 - 233 546 2.5E-35
17 g10770.t1 Gene3D G3DSA:3.40.190.10 - 312 518 2.5E-35
15 g10770.t1 Gene3D G3DSA:1.10.287.70 - 321 428 2.5E-35
21 g10770.t1 Gene3D G3DSA:3.40.190.10 - 764 1098 4.1E-30
19 g10770.t1 Gene3D G3DSA:3.40.190.10 - 843 1046 4.1E-30
13 g10770.t1 Gene3D G3DSA:1.10.287.70 - 852 1109 4.1E-30
18 g10770.t1 Gene3D G3DSA:3.40.190.10 - 1296 1629 9.0E-43
16 g10770.t1 Gene3D G3DSA:3.40.190.10 - 1374 1581 9.0E-43
14 g10770.t1 Gene3D G3DSA:1.10.287.70 - 1384 1657 9.0E-43
4 g10770.t1 PANTHER PTHR42643:SF16 IONOTROPIC RECEPTOR 11A-RELATED 150 539 1.5E-171
7 g10770.t1 PANTHER PTHR42643 IONOTROPIC RECEPTOR 20A-RELATED 150 539 1.5E-171
3 g10770.t1 PANTHER PTHR42643:SF16 IONOTROPIC RECEPTOR 11A-RELATED 624 1107 1.5E-171
6 g10770.t1 PANTHER PTHR42643 IONOTROPIC RECEPTOR 20A-RELATED 624 1107 1.5E-171
5 g10770.t1 PANTHER PTHR42643:SF16 IONOTROPIC RECEPTOR 11A-RELATED 1225 1659 1.5E-171
8 g10770.t1 PANTHER PTHR42643 IONOTROPIC RECEPTOR 20A-RELATED 1225 1659 1.5E-171
1 g10770.t1 Pfam PF10613 Ligated ion channel L-glutamate- and glycine-binding site 223 311 3.7E-7
2 g10770.t1 Pfam PF10613 Ligated ion channel L-glutamate- and glycine-binding site 1287 1381 5.8E-9
31 g10770.t1 Phobius SIGNAL_PEPTIDE Signal peptide region 1 20 -
32 g10770.t1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 5 -
33 g10770.t1 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 6 16 -
41 g10770.t1 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 17 20 -
30 g10770.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 21 334 -
39 g10770.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 335 355 -
24 g10770.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 356 394 -
35 g10770.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 395 414 -
29 g10770.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 415 865 -
36 g10770.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 866 888 -
23 g10770.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 889 925 -
34 g10770.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 926 945 -
28 g10770.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 946 1397 -
40 g10770.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1398 1419 -
26 g10770.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1420 1456 -
37 g10770.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1457 1476 -
27 g10770.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1477 1635 -
38 g10770.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1636 1659 -
25 g10770.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1660 1660 -
51 g10770.t1 SMART SM00918 Lig_chan_Glu_bd_2 219 282 0.02
49 g10770.t1 SMART SM00918 Lig_chan_Glu_bd_2 752 813 0.38
50 g10770.t1 SMART SM00918 Lig_chan_Glu_bd_2 1282 1344 0.026
11 g10770.t1 SUPERFAMILY SSF53850 Periplasmic binding protein-like II 207 541 1.09E-18
10 g10770.t1 SUPERFAMILY SSF53850 Periplasmic binding protein-like II 756 1079 5.43E-17
9 g10770.t1 SUPERFAMILY SSF53850 Periplasmic binding protein-like II 1269 1613 7.93E-20
12 g10770.t1 SignalP_EUK SignalP-noTM SignalP-noTM 1 20 -
44 g10770.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 335 357 -
43 g10770.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 395 414 -
46 g10770.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 866 888 -
42 g10770.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 926 945 -
48 g10770.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1397 1419 -
47 g10770.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1457 1476 -
45 g10770.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1637 1659 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0004970 ionotropic glutamate receptor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed