Gene loci information

Transcript annotation

  • This transcript has been annotated as ATP synthase subunit O, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10803 g10803.t10 isoform g10803.t10 12063615 12064710
chr_1 g10803 g10803.t10 exon g10803.t10.exon1 12063615 12063961
chr_1 g10803 g10803.t10 TTS g10803.t10 12063626 12063626
chr_1 g10803 g10803.t10 cds g10803.t10.CDS1 12063806 12063961
chr_1 g10803 g10803.t10 exon g10803.t10.exon2 12064020 12064441
chr_1 g10803 g10803.t10 cds g10803.t10.CDS2 12064020 12064441
chr_1 g10803 g10803.t10 exon g10803.t10.exon3 12064704 12064710
chr_1 g10803 g10803.t10 cds g10803.t10.CDS3 12064704 12064710
chr_1 g10803 g10803.t10 TSS g10803.t10 12064779 12064779

Sequences

>g10803.t10 Gene=g10803 Length=776
ATGGCTTTTGCTCAACAACTTGTTAAGCCACCAATTCAAGTTTTTGGTATTGAGGGTCGT
TATGCCACTGCACTTTTCTCTGCTGCCTCGAAAACCAAAGCATTGGATGCTGTCGAAAAA
GATTTGACAAGTTTCCAAACATCCTTCAAATCGGACCCAAAGTTGCGTGACTTCATTCTC
AATCCAACAATCAAACGCAATGCAAAAGCTGCAGCACTGAAAGATGTCGCAAGTAAAGTC
AAGTTTAATCCTGCCACCGGCTTTCTTTTGGAAGCATTGGCTGAAAATGGAAGATTAAAT
AAACTTGACAATGTTATTAATGCCTTCAAATTAATGATGTCTGCAAATCGTGGTGAAGTT
GTTTGTGAAGTCATCACAGCTAAACCTTTGGATAATTCTCAGCGCAAAGATTTAGAAGCA
CAGTTAAAGAAATTCGTTAAATCAAATGAGAGCATTCAATTAACGGCTAAAGTTGACCCT
TCAATTATTGGAGGTATGATTGTATCAATCGGAGACAAATATGTAGATATGAGTGTTGCC
AGCAAAATCAAGAAATACAGTGATTTGATTTCTGCAGCTGTTTAAGTAAACTCATTGCCG
CTTAAAAATTCCAATTACAACAAATTTAATATCATGGCAATTCAGTCGTTAATATATTCT
TCAGAGACCTTGTGAAATTGCATAGAACATCATTTGGGAAATTATGATTACGATATGTGT
AGTAAATGAAGCAAAAAAAAAACTGAAAAGTTTCAAATAAATTTAAAATTAAAAAT

>g10803.t10 Gene=g10803 Length=194
MAFAQQLVKPPIQVFGIEGRYATALFSAASKTKALDAVEKDLTSFQTSFKSDPKLRDFIL
NPTIKRNAKAAALKDVASKVKFNPATGFLLEALAENGRLNKLDNVINAFKLMMSANRGEV
VCEVITAKPLDNSQRKDLEAQLKKFVKSNESIQLTAKVDPSIIGGMIVSIGDKYVDMSVA
SKIKKYSDLISAAV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g10803.t10 Gene3D G3DSA:1.10.520.20 - 16 111 0.00000
4 g10803.t10 Hamap MF_01416 ATP synthase subunit delta [atpD]. 13 192 17.63379
2 g10803.t10 PANTHER PTHR11910:SF1 ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL 5 187 0.00000
3 g10803.t10 PANTHER PTHR11910 ATP SYNTHASE DELTA CHAIN 5 187 0.00000
8 g10803.t10 PRINTS PR00125 ATP synthase delta subunit signature 17 36 0.00000
7 g10803.t10 PRINTS PR00125 ATP synthase delta subunit signature 87 98 0.00000
6 g10803.t10 PRINTS PR00125 ATP synthase delta subunit signature 98 112 0.00000
9 g10803.t10 PRINTS PR00125 ATP synthase delta subunit signature 150 165 0.00000
5 g10803.t10 PRINTS PR00125 ATP synthase delta subunit signature 165 183 0.00000
1 g10803.t10 Pfam PF00213 ATP synthase delta (OSCP) subunit 17 187 0.00000
10 g10803.t10 SUPERFAMILY SSF47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase 13 118 0.00000
12 g10803.t10 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 19 188 0.00000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0015986 ATP synthesis coupled proton transport BP
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values