General information for g10803.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ATP synthase subunit O, mitochondrial.
Parent gene
- The parent gene g10803 is located on chr_1: 12063806..12064710 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10803 | g10803.t16 | TTS | g10803.t16 | 12063626 | 12063626 |
| chr_1 | g10803 | g10803.t16 | isoform | g10803.t16 | 12063806 | 12064710 |
| chr_1 | g10803 | g10803.t16 | exon | g10803.t16.exon1 | 12063806 | 12063918 |
| chr_1 | g10803 | g10803.t16 | cds | g10803.t16.CDS1 | 12063892 | 12063918 |
| chr_1 | g10803 | g10803.t16 | exon | g10803.t16.exon2 | 12064020 | 12064466 |
| chr_1 | g10803 | g10803.t16 | cds | g10803.t16.CDS2 | 12064020 | 12064466 |
| chr_1 | g10803 | g10803.t16 | exon | g10803.t16.exon3 | 12064681 | 12064710 |
| chr_1 | g10803 | g10803.t16 | cds | g10803.t16.CDS3 | 12064681 | 12064710 |
| chr_1 | g10803 | g10803.t16 | TSS | g10803.t16 | 12064779 | 12064779 |
Sequences
>g10803.t16 Gene=g10803 Length=590
ATGGCTTGTGCGAATAAATTGGGCCTTTTGGCACGTAACATCAGTTCGTCATCAGTTGCT
CAACAACTTGTTAAGCCACCAATTCAAGTTTTTGGTATTGAGGGTCGTTATGCCACTGCA
CTTTTCTCTGCTGCCTCGAAAACCAAAGCATTGGATGCTGTCGAAAAAGATTTGACAAGT
TTCCAAACATCCTTCAAATCGGACCCAAAGTTGCGTGACTTCATTCTCAATCCAACAATC
AAACGCAATGCAAAAGCTGCAGCACTGAAAGATGTCGCAAGTAAAGTCAAGTTTAATCCT
GCCACCGGCTTTCTTTTGGAAGCATTGGCTGAAAATGGAAGATTAAATAAACTTGACAAT
GTTATTAATGCCTTCAAATTAATGATGTCTGCAAATCGTGGTGAAGTTGTTTGTGAAGTC
ATCACAGCTAAACCTTTGGATAATTCTCAGCGCAAAGATTTAGAAGCACAGTTAAAGTTG
ACCCTTCAATTATTGGAGGTATGATTGTATCAATCGGAGACAAATATGTAGATATGAGTG
TTGCCAGCAAAATCAAGAAATACAGTGATTTGATTTCTGCAGCTGTTTAA
>g10803.t16 Gene=g10803 Length=167
MACANKLGLLARNISSSSVAQQLVKPPIQVFGIEGRYATALFSAASKTKALDAVEKDLTS
FQTSFKSDPKLRDFILNPTIKRNAKAAALKDVASKVKFNPATGFLLEALAENGRLNKLDN
VINAFKLMMSANRGEVVCEVITAKPLDNSQRKDLEAQLKLTLQLLEV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g10803.t16 | Gene3D | G3DSA:1.10.520.20 | - | 32 | 127 | 0 |
| 2 | g10803.t16 | PANTHER | PTHR11910:SF1 | ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL | 9 | 160 | 0 |
| 3 | g10803.t16 | PANTHER | PTHR11910 | ATP SYNTHASE DELTA CHAIN | 9 | 160 | 0 |
| 5 | g10803.t16 | PRINTS | PR00125 | ATP synthase delta subunit signature | 33 | 52 | 0 |
| 6 | g10803.t16 | PRINTS | PR00125 | ATP synthase delta subunit signature | 103 | 114 | 0 |
| 4 | g10803.t16 | PRINTS | PR00125 | ATP synthase delta subunit signature | 114 | 128 | 0 |
| 1 | g10803.t16 | Pfam | PF00213 | ATP synthase delta (OSCP) subunit | 33 | 162 | 0 |
| 7 | g10803.t16 | SUPERFAMILY | SSF47928 | N-terminal domain of the delta subunit of the F1F0-ATP synthase | 29 | 134 | 0 |
| 9 | g10803.t16 | TIGRFAM | TIGR01145 | ATP_synt_delta: ATP synthase F1, delta subunit | 35 | 162 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0015986 | ATP synthesis coupled proton transport | BP |
| GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed