Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ATP synthase subunit O, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10803 g10803.t5 isoform g10803.t5 12063614 12064710
chr_1 g10803 g10803.t5 exon g10803.t5.exon1 12063614 12063961
chr_1 g10803 g10803.t5 TTS g10803.t5 12063626 12063626
chr_1 g10803 g10803.t5 cds g10803.t5.CDS1 12063928 12063961
chr_1 g10803 g10803.t5 exon g10803.t5.exon2 12064027 12064466
chr_1 g10803 g10803.t5 cds g10803.t5.CDS2 12064027 12064466
chr_1 g10803 g10803.t5 exon g10803.t5.exon3 12064681 12064710
chr_1 g10803 g10803.t5 cds g10803.t5.CDS3 12064681 12064710
chr_1 g10803 g10803.t5 TSS g10803.t5 12064779 12064779

Sequences

>g10803.t5 Gene=g10803 Length=818
ATGGCTTGTGCGAATAAATTGGGCCTTTTGGCACGTAACATCAGTTCGTCATCAGTTGCT
CAACAACTTGTTAAGCCACCAATTCAAGTTTTTGGTATTGAGGGTCGTTATGCCACTGCA
CTTTTCTCTGCTGCCTCGAAAACCAAAGCATTGGATGCTGTCGAAAAAGATTTGACAAGT
TTCCAAACATCCTTCAAATCGGACCCAAAGTTGCGTGACTTCATTCTCAATCCAACAATC
AAACGCAATGCAAAAGCTGCAGCACTGAAAGATGTCGCAAGTAAAGTCAAGTTTAATCCT
GCCACCGGCTTTCTTTTGGAAGCATTGGCTGAAAATGGAAGATTAAATAAACTTGACAAT
GTTATTAATGCCTTCAAATTAATGATGTCTGCAAATCGTGGTGAAGTTGTTTGTGAAGTC
ATCACAGCTAAACCTTTGGATAATTCTCAGCGCAAAGATTTAGAAGCACAAAATTCGTTA
AATCAAATGAGAGCATTCAATTAACGGCTAAAGTTGACCCTTCAATTATTGGAGGTATGA
TTGTATCAATCGGAGACAAATATGTAGATATGAGTGTTGCCAGCAAAATCAAGAAATACA
GTGATTTGATTTCTGCAGCTGTTTAAGTAAACTCATTGCCGCTTAAAAATTCCAATTACA
ACAAATTTAATATCATGGCAATTCAGTCGTTAATATATTCTTCAGAGACCTTGTGAAATT
GCATAGAACATCATTTGGGAAATTATGATTACGATATGTGTAGTAAATGAAGCAAAAAAA
AAACTGAAAAGTTTCAAATAAATTTAAAATTAAAAATA

>g10803.t5 Gene=g10803 Length=167
MACANKLGLLARNISSSSVAQQLVKPPIQVFGIEGRYATALFSAASKTKALDAVEKDLTS
FQTSFKSDPKLRDFILNPTIKRNAKAAALKDVASKVKFNPATGFLLEALAENGRLNKLDN
VINAFKLMMSANRGEVVCEVITAKPLDNSQRKDLEAQNSLNQMRAFN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g10803.t5 Gene3D G3DSA:1.10.520.20 - 32 127 0
2 g10803.t5 PANTHER PTHR11910:SF1 ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL 9 157 0
3 g10803.t5 PANTHER PTHR11910 ATP SYNTHASE DELTA CHAIN 9 157 0
5 g10803.t5 PRINTS PR00125 ATP synthase delta subunit signature 33 52 0
6 g10803.t5 PRINTS PR00125 ATP synthase delta subunit signature 103 114 0
4 g10803.t5 PRINTS PR00125 ATP synthase delta subunit signature 114 128 0
1 g10803.t5 Pfam PF00213 ATP synthase delta (OSCP) subunit 33 157 0
7 g10803.t5 SUPERFAMILY SSF47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase 29 134 0
9 g10803.t5 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 35 157 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0015986 ATP synthesis coupled proton transport BP
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed