General information for g10811.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein tramtrack, beta isoform.
Parent gene
- The parent gene g10811 is located on chr_1: 12082987..12089054 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10811 | g10811.t1 | isoform | g10811.t1 | 12076556 | 12082987 |
| chr_1 | g10811 | g10811.t1 | exon | g10811.t1.exon1 | 12076556 | 12076755 |
| chr_1 | g10811 | g10811.t1 | cds | g10811.t1.CDS1 | 12076556 | 12076755 |
| chr_1 | g10811 | g10811.t1 | exon | g10811.t1.exon2 | 12076818 | 12077336 |
| chr_1 | g10811 | g10811.t1 | cds | g10811.t1.CDS2 | 12076818 | 12077336 |
| chr_1 | g10811 | g10811.t1 | exon | g10811.t1.exon3 | 12079564 | 12080550 |
| chr_1 | g10811 | g10811.t1 | cds | g10811.t1.CDS3 | 12079564 | 12080550 |
| chr_1 | g10811 | g10811.t1 | exon | g10811.t1.exon4 | 12081494 | 12081572 |
| chr_1 | g10811 | g10811.t1 | cds | g10811.t1.CDS4 | 12081494 | 12081572 |
| chr_1 | g10811 | g10811.t1 | exon | g10811.t1.exon5 | 12081635 | 12081748 |
| chr_1 | g10811 | g10811.t1 | cds | g10811.t1.CDS5 | 12081635 | 12081748 |
| chr_1 | g10811 | g10811.t1 | exon | g10811.t1.exon6 | 12081827 | 12082294 |
| chr_1 | g10811 | g10811.t1 | cds | g10811.t1.CDS6 | 12081827 | 12082294 |
| chr_1 | g10811 | g10811.t1 | exon | g10811.t1.exon7 | 12082850 | 12082987 |
| chr_1 | g10811 | g10811.t1 | cds | g10811.t1.CDS7 | 12082850 | 12082987 |
| chr_1 | g10811 | g10811.t1 | TSS | g10811.t1 | NA | NA |
| chr_1 | g10811 | g10811.t1 | TTS | g10811.t1 | NA | NA |
Sequences
>g10811.t1 Gene=g10811 Length=2505
ATGACTTCACAACGCTTCTGTCTACGATGGAATAACCACCAATCTAATCTTTTATCTGTC
TTTGATCAACTTTTACATGCTGAAACATTCACAGATGTGACGCTAGCAATTGATGGACAA
TATCTTAAGGCTCACAAGATGGTCTTATCAGCCTGCAGTCCATATTTCCAACAACTATTC
GTTAATCATCCCGAAAAACATCCGATTGTTATTTTACGTGATGTACCCTATGCTGATATG
AAGAGTCTCTTAGATTTTATGTATCGTGGTGAAGTATCAGTTGATCAAGAGCGATTATCA
GCATTTTTACGAGTTGCCGAGAGTCTAAGGATAAAAGGCTTAACAGAAGTTAACGATGAC
AAGCCACCGAATCGTGAGCAAAGTGATACACCATTATCAACCACGCAGCAGACACGTTCT
CAAAGTAGTTTTGTGCAACAGCAACGTAAAGTTCTGCAACAACAGCAAATTCCACAACAG
CAGCAACAAACACAACAAACAAGCAGTCCGTCAATGCCTAAACGAAAAAGGGGCCGTCCT
AGAAAATTAAGTGGTAGTGATGATGTAGATGACTATGATGACGACTATCGAGAGAATTTG
CTGCAGGAATCACCGGAACTGATGGAAGTAAAAATGAATACAGATAACTTTTCAAATTCA
GGCAATGAGACAAATTCTGATGAAAATGATAGCAGACGACGACCAGATGATACAGATGAA
GATTCAAGCTCACAACAAAAGAGACAGAAAAATGACACAAATGATGGAACAAGTGTAAAA
AAGGACGAAACATCAAATGCCGATCAAGGTGATTCAGATGAGGACGATGATCAAGCGATG
ATGATTGAACCACAGCTGCTTTTGGATGAATTTGATGAACCAATGGAATTTAAATATAAT
CCTGAAGATTCAAATTCGAATGCATCACAGCGTACTACACCAGCACCACAGAATGGAAAT
CAGGAGGCTAATGGCACGAGCAATAACAATAATAGTCTGACACAGCAGCAAGTTCTTATG
CCGCAACTTTTACAAAAAAAGCAGCAGCTTCTATTGCAGCAGTCAATGCCAAAGTTAACG
CCTATTGCTGGCGGACAGACGGCAGCACAAGCATTCATCATTGCTAACAAAAACCTACCA
AAGCAAAATAAACGTGCAAAATTACTGAAGCAACAGAATGGTGAAATGAAACCGATATCT
GTGCAAACAGGCTCACAGCAGCAGCTTCAATTACCAAATGTTTTAAGCGGCATCAATAAT
AATGAATTCATCGATCTTTTTTCCAATAATTCAATGAACAATTTGCTCCTTAATTCGATG
AATCAAACGAATCTGAATAATCTCAAGATTAAGGCAATAAAACAAATGATGCCAACGCCA
GTCACTCCTCAACAGCAGTCACAGACATCACCGATATCAACGGCAGGAAGCGATTCGGGT
ATAAAGATTGAGCCAGTTATTCAGGACAATCGAAGCAATAAATATGCAATTGATGATTCA
GAGGGATCCGTTCGTGATTTTTGTACCAAAGAGGCAGATCATGTGTATCGTTGCAAAGTG
TGTTCACGCGTTTACACTCATATCAGTAATTTTTGTCGTCATTATGTGACATCGCATAAA
CGCAATGTCAAAGTCTATCCATGTCCATTCTGTTTTAAAGAGTTTACGCGAAAGGATAAC
ATGACGGCGCATGTCAAAATTATTCATAAGCTCGAAAATCAACAGCAACAAGAACAAGGC
TATGCATCACCATCGCAAAATAATACGCCCACACTACCAACAGCCAACGGTTTACTTGTT
CCCAAGACTGAGCCTGAAGAGGAAATCACGGAAATTGAAGATAATGAACAATCAAAAGTG
TCACGACCACAAATCAGAATAGCCAGTAATTTAGTATCACAAAAGAAAAATGACACTGAT
ATTATGCCAGCAACCAACGATGTTAGTGACTCACGGTGGATTAAGCAACAGGACAGCAAT
GGATCAAATAATACTTCACCGATATTTATAAATGATATTAATAAAACAAATGATTCGCCA
TCGAATAGTACACTCACATCACCATCATCAGGACAAAAAGTTATGAGACGAAGAATAAGA
AGGAAAAATAACTCACCCGATGATCAAGCTTTAACACTGACCGAAATGTCTGTACGAGGA
TTAAATCTTTTTAGATATGCAAGCGTACAAGATGGTGTATATCAATGCACAGAATGTCTT
AAAGAGAATGTTCAAAAGACATTTAAGAATAAATACAGTTTTCAACGACATGCATTTTTA
TATCATGAAGGCACTCAAAGAAAAGTGTTTCCATGTCCCGTATGCAGAAAAGAATTTTCA
CGACCTGATAAAATGAAAAATCACATGAAGATGACACATGAATGTTATATGCCTAAAGAA
TGCAAATTTCCAATTCCTATTATGTCATCAGGTGGAAGTTCATCATCTCAACTTGCACCA
CCTATAAACAACAACAATAATAATGTTGTAGCAACTTCACAATGA
>g10811.t1 Gene=g10811 Length=834
MTSQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAIDGQYLKAHKMVLSACSPYFQQLF
VNHPEKHPIVILRDVPYADMKSLLDFMYRGEVSVDQERLSAFLRVAESLRIKGLTEVNDD
KPPNREQSDTPLSTTQQTRSQSSFVQQQRKVLQQQQIPQQQQQTQQTSSPSMPKRKRGRP
RKLSGSDDVDDYDDDYRENLLQESPELMEVKMNTDNFSNSGNETNSDENDSRRRPDDTDE
DSSSQQKRQKNDTNDGTSVKKDETSNADQGDSDEDDDQAMMIEPQLLLDEFDEPMEFKYN
PEDSNSNASQRTTPAPQNGNQEANGTSNNNNSLTQQQVLMPQLLQKKQQLLLQQSMPKLT
PIAGGQTAAQAFIIANKNLPKQNKRAKLLKQQNGEMKPISVQTGSQQQLQLPNVLSGINN
NEFIDLFSNNSMNNLLLNSMNQTNLNNLKIKAIKQMMPTPVTPQQQSQTSPISTAGSDSG
IKIEPVIQDNRSNKYAIDDSEGSVRDFCTKEADHVYRCKVCSRVYTHISNFCRHYVTSHK
RNVKVYPCPFCFKEFTRKDNMTAHVKIIHKLENQQQQEQGYASPSQNNTPTLPTANGLLV
PKTEPEEEITEIEDNEQSKVSRPQIRIASNLVSQKKNDTDIMPATNDVSDSRWIKQQDSN
GSNNTSPIFINDINKTNDSPSNSTLTSPSSGQKVMRRRIRRKNNSPDDQALTLTEMSVRG
LNLFRYASVQDGVYQCTECLKENVQKTFKNKYSFQRHAFLYHEGTQRKVFPCPVCRKEFS
RPDKMKNHMKMTHECYMPKECKFPIPIMSSGGSSSSQLAPPINNNNNNVVATSQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g10811.t1 | CDD | cd18315 | BTB_POZ_BAB-like | 30 | 113 | 3.09357E-36 |
| 14 | g10811.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 7 | 165 | 1.7E-33 |
| 13 | g10811.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 542 | 570 | 1.9E-11 |
| 12 | g10811.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 731 | 801 | 1.3E-10 |
| 30 | g10811.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 278 | - |
| 34 | g10811.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 173 | - |
| 29 | g10811.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 225 | - |
| 28 | g10811.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 267 | - |
| 31 | g10811.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 324 | - |
| 32 | g10811.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 652 | - |
| 33 | g10811.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 596 | - |
| 26 | g10811.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 652 | - |
| 25 | g10811.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 693 | - |
| 27 | g10811.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 696 | - |
| 24 | g10811.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 813 | 834 | - |
| 5 | g10811.t1 | PANTHER | PTHR23110:SF99 | PRE-MOD(MDG4)-T-RELATED | 1 | 581 | 2.9E-134 |
| 7 | g10811.t1 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 1 | 581 | 2.9E-134 |
| 4 | g10811.t1 | PANTHER | PTHR23110:SF99 | PRE-MOD(MDG4)-T-RELATED | 655 | 801 | 2.9E-134 |
| 6 | g10811.t1 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 655 | 801 | 2.9E-134 |
| 1 | g10811.t1 | Pfam | PF00651 | BTB/POZ domain | 21 | 117 | 9.3E-25 |
| 2 | g10811.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 546 | 569 | 0.0016 |
| 3 | g10811.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 770 | 793 | 2.5E-4 |
| 18 | g10811.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 518 | 539 | - |
| 16 | g10811.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 548 | 569 | - |
| 17 | g10811.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 772 | 793 | - |
| 38 | g10811.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 31 | 96 | 23.105 |
| 36 | g10811.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 516 | 544 | 9.037 |
| 37 | g10811.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 546 | 574 | 11.24 |
| 35 | g10811.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 770 | 798 | 11.219 |
| 19 | g10811.t1 | SMART | SM00225 | BTB_4 | 31 | 126 | 1.2E-25 |
| 23 | g10811.t1 | SMART | SM00355 | c2h2final6 | 516 | 539 | 0.28 |
| 20 | g10811.t1 | SMART | SM00355 | c2h2final6 | 546 | 569 | 0.0024 |
| 21 | g10811.t1 | SMART | SM00355 | c2h2final6 | 734 | 762 | 4.2 |
| 22 | g10811.t1 | SMART | SM00355 | c2h2final6 | 770 | 793 | 3.3E-4 |
| 11 | g10811.t1 | SUPERFAMILY | SSF54695 | POZ domain | 4 | 116 | 4.29E-30 |
| 8 | g10811.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 511 | 544 | 5.71E-9 |
| 10 | g10811.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 545 | 569 | 5.97E-7 |
| 9 | g10811.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 770 | 793 | 1.22E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K09237 (tramtrack)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
