General information for g10811.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein tramtrack, alpha isoform.
Parent gene
- The parent gene g10811 is located on chr_1: 12082987..12089054 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10811 | g10811.t2 | TTS | g10811.t2 | 12079525 | 12079525 |
| chr_1 | g10811 | g10811.t2 | isoform | g10811.t2 | 12080550 | 12082294 |
| chr_1 | g10811 | g10811.t2 | exon | g10811.t2.exon1 | 12080550 | 12081210 |
| chr_1 | g10811 | g10811.t2 | cds | g10811.t2.CDS1 | 12081176 | 12081210 |
| chr_1 | g10811 | g10811.t2 | exon | g10811.t2.exon2 | 12081494 | 12081572 |
| chr_1 | g10811 | g10811.t2 | cds | g10811.t2.CDS2 | 12081494 | 12081572 |
| chr_1 | g10811 | g10811.t2 | exon | g10811.t2.exon3 | 12081635 | 12081748 |
| chr_1 | g10811 | g10811.t2 | cds | g10811.t2.CDS3 | 12081635 | 12081748 |
| chr_1 | g10811 | g10811.t2 | exon | g10811.t2.exon4 | 12081827 | 12082294 |
| chr_1 | g10811 | g10811.t2 | cds | g10811.t2.CDS4 | 12081827 | 12082294 |
| chr_1 | g10811 | g10811.t2 | TSS | g10811.t2 | NA | NA |
Sequences
>g10811.t2 Gene=g10811 Length=1322
ATGGTCTTATCAGCCTGCAGTCCATATTTCCAACAACTATTCGTTAATCATCCCGAAAAA
CATCCGATTGTTATTTTACGTGATGTACCCTATGCTGATATGAAGAGTCTCTTAGATTTT
ATGTATCGTGGTGAAGTATCAGTTGATCAAGAGCGATTATCAGCATTTTTACGAGTTGCC
GAGAGTCTAAGGATAAAAGGCTTAACAGAAGTTAACGATGACAAGCCACCGAATCGTGAG
CAAAGTGATACACCATTATCAACCACGCAGCAGACACGTTCTCAAAGTAGTTTTGTGCAA
CAGCAACGTAAAGTTCTGCAACAACAGCAAATTCCACAACAGCAGCAACAAACACAACAA
ACAAGCAGTCCGTCAATGCCTAAACGAAAAAGGGGCCGTCCTAGAAAATTAAGTGGTAGT
GATGATGTAGATGACTATGATGACGACTATCGAGAGAATTTGCTGCAGGAATCACCGGAA
CTGATGGAAGTAAAAATGAATACAGATAACTTTTCAAATTCAGGCAATGAGACAAATTCT
GATGAAAATGATAGCAGACGACGACCAGATGATACAGATGAAGATTCAAGCTCACAACAA
AAGAGACAGAAAAATGACACAAATGATGGAACAAGTGTAAAAAAGGACGAAACATCAAAT
GGTGAGTTTCCACTTTGCTTCATGATGATTTCATAATCCCGATTTGAGAAAGAAAAAATC
CCAGAAAATTAGACTTCGCCCTTTGAGAATTACATTTCTTTAATATATTTTTTGTGAATT
AGATTTAACAATTGAATAAACAGTAACAGTTGAGAAAAAAGGGAGCTTAATTTAGGGATT
TTTGGCTGACGTGAACAAAAACGATTTCAATTTTATATTTCCTGCTTTTTGATAAATTTT
ATTATACTTTTTATAATACATTTTTTCTTATTTGCTTCACATTTGCGGACAGAAGCTTTA
TGAAATCTTTAATAAAAATCGAGATCAAAAATCATCACAAAATTGCGTCACCGTGAATGA
AGGCTCAAAAAATCCCTAAAGCTTTTCCTTTGACATAAACCACTTTAAAAACGAAAAAAA
ATTTTTCCTGGGCATTTTTCTCTCTCTCACTTTATTATGAGACATCAGAACAAAGTTTTA
ATATATTTTGCAAATTTTGATGAGTCATAGAGTATGAAGAAACTAATAAGGCCAATAAGT
CAATTGAAATTTTACACCCGATCAAAAAAAGTCATTTTTGCTGATATGCTTCATGGCTCA
TAAAAGTTTGCGACACTTGCACAAGCAATAATAATCCAATAATTTTTCTATTTTATTTTA
GC
>g10811.t2 Gene=g10811 Length=231
MVLSACSPYFQQLFVNHPEKHPIVILRDVPYADMKSLLDFMYRGEVSVDQERLSAFLRVA
ESLRIKGLTEVNDDKPPNREQSDTPLSTTQQTRSQSSFVQQQRKVLQQQQIPQQQQQTQQ
TSSPSMPKRKRGRPRKLSGSDDVDDYDDDYRENLLQESPELMEVKMNTDNFSNSGNETNS
DENDSRRRPDDTDEDSSSQQKRQKNDTNDGTSVKKDETSNGEFPLCFMMIS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10811.t2 | CDD | cd18315 | BTB_POZ_BAB-like | 1 | 67 | 6.01788E-29 |
| 5 | g10811.t2 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 123 | 3.6E-20 |
| 11 | g10811.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 231 | - |
| 10 | g10811.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 127 | - |
| 9 | g10811.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 179 | - |
| 8 | g10811.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 216 | - |
| 2 | g10811.t2 | PANTHER | PTHR23110:SF99 | PRE-MOD(MDG4)-T-RELATED | 1 | 209 | 2.3E-56 |
| 3 | g10811.t2 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 1 | 209 | 2.3E-56 |
| 1 | g10811.t2 | Pfam | PF00651 | BTB/POZ domain | 1 | 71 | 5.8E-16 |
| 12 | g10811.t2 | ProSiteProfiles | PS50097 | BTB domain profile. | 1 | 50 | 16.363 |
| 7 | g10811.t2 | SMART | SM00225 | BTB_4 | 2 | 80 | 1.7E-6 |
| 4 | g10811.t2 | SUPERFAMILY | SSF54695 | POZ domain | 1 | 70 | 6.2E-15 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
