General information for g10831.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Translation initiation factor eIF-2B subunit epsilon.
Parent gene
- The parent gene g10831 is located on chr_1: 12169128..12170080 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10831 | g10831.t4 | TSS | g10831.t4 | 12167885 | 12167885 |
| chr_1 | g10831 | g10831.t4 | isoform | g10831.t4 | 12168329 | 12169128 |
| chr_1 | g10831 | g10831.t4 | exon | g10831.t4.exon1 | 12168329 | 12169128 |
| chr_1 | g10831 | g10831.t4 | cds | g10831.t4.CDS1 | 12168350 | 12169126 |
| chr_1 | g10831 | g10831.t4 | TTS | g10831.t4 | 12170151 | 12170151 |
Sequences
>g10831.t4 Gene=g10831 Length=800
CATTTGACATGGTCTGTTGGTATGAATGTTCAAGTAATTGCATGTGAAGTAAGATCACTT
GGAGATGCTATGCGAGAATTAGATGGGAAAGGAATGATACGTGGAGATTTCATTTTGATG
AATTTTGATACGATAACAAATGCCAAATTAATTCCTTCAATTTTGAAGGCACACAAAGAT
AATTGCAAACGCGATAAAGAAACAGCAATGACAGTTGTCTATAACAAAATCTCATCTGGT
CAACGAACTGGTAATGAAGTTGTAATTGCTACAAATAAGAGAACAAAAAGACTTTTATTT
CATCAAAGAATACATCCGACAAATAAAGAAGAAAAGTTTAAATTTCCACTTGAAATATTT
CTTGATAATAAGGAAGTTTCACTTCATCATGATTTAATTGATCCACAAATTGCCATATGT
TCAACCTCAGCACTTCCATTATTTTCTGATAATTTTGATTATGATACACGCGATCAATTT
ATTCGTGGAATTGTTATGGATCAAGAATTACAAGCTGCTTCAATTTATGTAGAACAATTG
CCAATTGATCAATATGCTGCGAAAGTTAGTGATTGGATTGCGTATCACACAATTTCTCAG
GATATTATGAATAGATGGGTTTATCCGTTAGTTCCCGATATGGGAGTATGTGCATTAAAG
CAACAATATCTATTTCTTAAAAATAACATTTATCGTAATAATTCGGTAAAAGTTGCAAGA
AACTGTTCGATTAAAAATGATGTAGTGTTACATGAAAATGTGAATATCGGTGATGAATCT
TTGTTAGCTCGATGTGTGTT
>g10831.t4 Gene=g10831 Length=259
MNVQVIACEVRSLGDAMRELDGKGMIRGDFILMNFDTITNAKLIPSILKAHKDNCKRDKE
TAMTVVYNKISSGQRTGNEVVIATNKRTKRLLFHQRIHPTNKEEKFKFPLEIFLDNKEVS
LHHDLIDPQIAICSTSALPLFSDNFDYDTRDQFIRGIVMDQELQAASIYVEQLPIDQYAA
KVSDWIAYHTISQDIMNRWVYPLVPDMGVCALKQQYLFLKNNIYRNNSVKVARNCSIKND
VVLHENVNIGDESLLARCV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g10831.t4 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 2 | 224 | 0e+00 |
| 1 | g10831.t4 | PANTHER | PTHR45887 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON | 1 | 258 | 0e+00 |
| 2 | g10831.t4 | PANTHER | PTHR45887:SF1 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON | 1 | 258 | 0e+00 |
| 3 | g10831.t4 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 16 | 247 | 2e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
