General information for g10831.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10831 is located on chr_1: 12169128..12170080 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10831 | g10831.t5 | isoform | g10831.t5 | 12169128 | 12170080 |
| chr_1 | g10831 | g10831.t5 | exon | g10831.t5.exon1 | 12169128 | 12170080 |
| chr_1 | g10831 | g10831.t5 | cds | g10831.t5.CDS1 | 12169304 | 12170080 |
| chr_1 | g10831 | g10831.t5 | TTS | g10831.t5 | 12170151 | 12170151 |
| chr_1 | g10831 | g10831.t5 | TSS | g10831.t5 | NA | NA |
Sequences
>g10831.t5 Gene=g10831 Length=953
TAGGTAAAAATTGCATAGTTGGTAAAAATTGTACAATTAGAAATGCTTATATATTTGACA
ACACAAAAATAAGTGACAATTGCAAACTTGAGAATTGTATAATCGGTGCATCTGTGCTGA
TCAACGAAGATTGCACAATAAAGAATGGAACTGTAATAACAAATGATTGTATAATTATGA
AAAAAGAAGAACATTCTGGTTCTCTTATTCAATCAAAAATTCCTGATGATGATGATTATC
TGCAAGATTCATTTGAAAAACTTAACGATAAAGCATACAAATACATTGAAAATAGAGAAT
CAACCCGAAATGACTCTGAAGATGATCTTGACGATCAAGAAGATGATGATAATGATGCAG
AAGTTTATATAAAACTTATACCAAAAGTTCCAAATTATGAATCAAGTGCTTACAGTTCAG
AAACCGATAGCGATGATGATGAGAATGATGTAGGTGTAGCACAAGAAGATTCAATAATTT
TCTTAACGGAAGTCATTGATTCATTAAAACGTGGATTTGATGAGAAATCAAATCCAGACT
TTTTGATTTTGGAAATCAATTCATCTCGCTATGCTTATAATATACAACTCAACGAAGTTA
ACTTTTTCGTCATAAAAGCATGTTTTAATTTACCCGTTGTTCTCGATCATGCCGATGCTT
TGGAAGGGTTTAAACAGGTCTATAATTATCTGGGAGATAAAGTTATTAAAAACTATATAA
AAGGTGATGGAGCAATGGTTGATTGTCTTAATGCAATCGTAGAATGTTGCGAAGAATCTG
AAAAATTAAAACCTAAACTTATGAAAACACTTCACTTTCTTTACAATGAAGATATTTTAA
CTGAGGACATAATTATTTCGTGGTATGAAGATATCGATAAAAATTGGGTTAAAGTAGCAC
TAAATAAGTTTATTACATGGCTTCAACAAGAAAGTGAATCTGATTCAGAATAA
>g10831.t5 Gene=g10831 Length=258
MKKEEHSGSLIQSKIPDDDDYLQDSFEKLNDKAYKYIENRESTRNDSEDDLDDQEDDDND
AEVYIKLIPKVPNYESSAYSSETDSDDDENDVGVAQEDSIIFLTEVIDSLKRGFDEKSNP
DFLILEINSSRYAYNIQLNEVNFFVIKACFNLPVVLDHADALEGFKQVYNYLGDKVIKNY
IKGDGAMVDCLNAIVECCEESEKLKPKLMKTLHFLYNEDILTEDIIISWYEDIDKNWVKV
ALNKFITWLQQESESDSE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10831.t5 | CDD | cd11558 | W2_eIF2B_epsilon | 97 | 257 | 1.23285E-43 |
| 6 | g10831.t5 | Coils | Coil | Coil | 37 | 57 | - |
| 5 | g10831.t5 | Gene3D | G3DSA:1.25.40.180 | - | 90 | 258 | 8.8E-44 |
| 10 | g10831.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - |
| 9 | g10831.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 59 | - |
| 2 | g10831.t5 | PANTHER | PTHR45887 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON | 28 | 258 | 3.5E-30 |
| 3 | g10831.t5 | PANTHER | PTHR45887:SF1 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON | 28 | 258 | 3.5E-30 |
| 1 | g10831.t5 | Pfam | PF02020 | eIF4-gamma/eIF5/eIF2-epsilon | 187 | 258 | 4.5E-17 |
| 11 | g10831.t5 | ProSiteProfiles | PS51363 | W2 domain profile. | 96 | 258 | 22.247 |
| 8 | g10831.t5 | SMART | SM00515 | 542_3 | 174 | 256 | 2.3E-15 |
| 4 | g10831.t5 | SUPERFAMILY | SSF48371 | ARM repeat | 102 | 251 | 2.24E-28 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0005085 | guanyl-nucleotide exchange factor activity | MF |
| GO:0031369 | translation initiation factor binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
