General information for g1090.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable cytochrome P450 313b1.
Parent gene
- The parent gene g1090 is located on chr_3: 8079782..8081488 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1090 | g1090.t1 | isoform | g1090.t1 | 8079782 | 8081488 |
| chr_3 | g1090 | g1090.t1 | exon | g1090.t1.exon1 | 8079782 | 8080378 |
| chr_3 | g1090 | g1090.t1 | cds | g1090.t1.CDS1 | 8079782 | 8080378 |
| chr_3 | g1090 | g1090.t1 | exon | g1090.t1.exon2 | 8080516 | 8080795 |
| chr_3 | g1090 | g1090.t1 | cds | g1090.t1.CDS2 | 8080516 | 8080795 |
| chr_3 | g1090 | g1090.t1 | exon | g1090.t1.exon3 | 8080872 | 8081488 |
| chr_3 | g1090 | g1090.t1 | cds | g1090.t1.CDS3 | 8080872 | 8081488 |
| chr_3 | g1090 | g1090.t1 | TSS | g1090.t1 | NA | NA |
| chr_3 | g1090 | g1090.t1 | TTS | g1090.t1 | NA | NA |
Sequences
>g1090.t1 Gene=g1090 Length=1494
ATGTTCATAAAAGAAATTTTGCTTGGATTTTTTATAATTTTCATCGTAAGATTAGTTTGG
AAATGGAAAAGATTTTTTTATCTTGCCAGTAAAATCCCAAAAAGTCAGTTTGATTTTTCA
TGGCAAGGAGTGAAAGATGCATTTAATGCTGACAATCGAATGATTTTTAAGATGATTTAT
GAAAGTTTTGATGGTGTCAATGGATTAGCAAAAACTTGGCTTGGTCCGATGCTGTTTGTG
ATTATAAGTTCACCAGAAGATGTAAAAATTGTGATGAATTCCAAAGAATGTTTAGACAAA
CCATATTTCATAAGATTTCCAGGACCAGTCTTAAAAGGTACACTTTTTGGTGACATTGAA
TTTTGGCATAAACATCGAAAAATTCTCGATCCTTATTTTGGTGTACAAAAATTGAAAAGA
TTTATTGATTTATTTGATGAAAAATCAAAAGTTTTGACTAAAAATGTCGCAAAAATGCTC
GATCAAGGTGATTTTGATATTTTTCATTATATGACAGCACTGACTTTAGAAACAATTCTC
AATGCAATGGAATTTGAAATTGATATTCAAAATCAAGAAAGTAAAGTTAGAGATTTAACA
ATCGAAGGCTTAGAAATAGCAACCAAATTAGTAACACAAAGGATTTTCAGATTCTACCTT
CATCCAGAGTTTATTTATCGTCAGACAAAAATGTATGTGACTGAAACAAAGGCAAAAGCT
CATTCAGCATTTTCATATACTGATGATGTGATTAATAATATTCGTATAAAATTAAAGAAG
AACCATGATGAAGTAGAAGAAGATAAACCAACAACCTTTATGCGTGCACTGGTTAGTTCC
AAGTTCAATTTGGATGAAAGTGAGATTCGTGATGAAGTTAAGACTCTTTTGATTGCGGCA
CAGGACACAACAGCAATATCAATGTCAGCAACACTTTTACTACTTGCAATGCACAAAGAT
AAACAAGCAAAAGTCATTGATGAAATGCATCGAGTTATTGGCAATAATCCTGATATACCG
TTTACAGATTTTGATAAGCTCAATGAACTGCATTATCTTGAAATGGTCATTAATGAAGCA
CTAAGACTCATGCCAGTTGTTCCTTTTGTATTTCGATCAGTTGACAGTGAAATTACTTCA
CATGAAGGTTATATCATTCCACCAAATGCAAATCTCATCATTCCGATCTTTAAAATTCAA
CGAAATAAAACATTTTGGGGTGAAGATGCTAATAAGTTCAGACCTGAAAGATTTGAGAAA
GAAAACATCAAAAAAGTCAATTCTTATGCTTTTCTACCTTTTACAAAAGGACCACGAATT
TGTTTAGGTTGGCGATATGCAATGATGTTGATGAAAATTCAACTTTGTAACTTTCTGATG
CGCTATGAAGTTGACACAAGTTTAAAATATGAAGAATTAGAGTTTGAGTTAAATGTGACC
TTGAATATTTGTCAAGGTTTTAAAATTAGCATTAAAGAACGAAAAGAAAGATGA
>g1090.t1 Gene=g1090 Length=497
MFIKEILLGFFIIFIVRLVWKWKRFFYLASKIPKSQFDFSWQGVKDAFNADNRMIFKMIY
ESFDGVNGLAKTWLGPMLFVIISSPEDVKIVMNSKECLDKPYFIRFPGPVLKGTLFGDIE
FWHKHRKILDPYFGVQKLKRFIDLFDEKSKVLTKNVAKMLDQGDFDIFHYMTALTLETIL
NAMEFEIDIQNQESKVRDLTIEGLEIATKLVTQRIFRFYLHPEFIYRQTKMYVTETKAKA
HSAFSYTDDVINNIRIKLKKNHDEVEEDKPTTFMRALVSSKFNLDESEIRDEVKTLLIAA
QDTTAISMSATLLLLAMHKDKQAKVIDEMHRVIGNNPDIPFTDFDKLNELHYLEMVINEA
LRLMPVVPFVFRSVDSEITSHEGYIIPPNANLIIPIFKIQRNKTFWGEDANKFRPERFEK
ENIKKVNSYAFLPFTKGPRICLGWRYAMMLMKIQLCNFLMRYEVDTSLKYEELEFELNVT
LNICQGFKISIKERKER
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g1090.t1 | Coils | Coil | Coil | 182 | 202 | - |
| 14 | g1090.t1 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 31 | 497 | 2.4E-91 |
| 2 | g1090.t1 | PANTHER | PTHR24291:SF140 | CYTOCHROME P450 4C3-RELATED | 8 | 494 | 3.2E-82 |
| 3 | g1090.t1 | PANTHER | PTHR24291 | CYTOCHROME P450 FAMILY 4 | 8 | 494 | 3.2E-82 |
| 6 | g1090.t1 | PRINTS | PR00463 | E-class P450 group I signature | 288 | 305 | 2.0E-13 |
| 11 | g1090.t1 | PRINTS | PR00385 | P450 superfamily signature | 299 | 316 | 2.4E-9 |
| 4 | g1090.t1 | PRINTS | PR00463 | E-class P450 group I signature | 308 | 334 | 2.0E-13 |
| 7 | g1090.t1 | PRINTS | PR00463 | E-class P450 group I signature | 354 | 372 | 2.0E-13 |
| 9 | g1090.t1 | PRINTS | PR00385 | P450 superfamily signature | 355 | 366 | 2.4E-9 |
| 8 | g1090.t1 | PRINTS | PR00463 | E-class P450 group I signature | 431 | 441 | 2.0E-13 |
| 10 | g1090.t1 | PRINTS | PR00385 | P450 superfamily signature | 432 | 441 | 2.4E-9 |
| 5 | g1090.t1 | PRINTS | PR00463 | E-class P450 group I signature | 441 | 464 | 2.0E-13 |
| 12 | g1090.t1 | PRINTS | PR00385 | P450 superfamily signature | 441 | 452 | 2.4E-9 |
| 1 | g1090.t1 | Pfam | PF00067 | Cytochrome P450 | 68 | 474 | 1.1E-69 |
| 17 | g1090.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 21 | - |
| 18 | g1090.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
| 19 | g1090.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 16 | - |
| 20 | g1090.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 17 | 21 | - |
| 16 | g1090.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 22 | 497 | - |
| 13 | g1090.t1 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 53 | 494 | 5.11E-87 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed