General information for g10917.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Zinc finger protein 26.
Parent gene
- The parent gene g10917 is located on chr_1: 12697522..12700927 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10917 | g10917.t1 | isoform | g10917.t1 | 12697522 | 12700927 |
| chr_1 | g10917 | g10917.t1 | exon | g10917.t1.exon1 | 12697522 | 12697641 |
| chr_1 | g10917 | g10917.t1 | cds | g10917.t1.CDS1 | 12697522 | 12697641 |
| chr_1 | g10917 | g10917.t1 | exon | g10917.t1.exon2 | 12697737 | 12698391 |
| chr_1 | g10917 | g10917.t1 | cds | g10917.t1.CDS2 | 12697737 | 12698391 |
| chr_1 | g10917 | g10917.t1 | exon | g10917.t1.exon3 | 12698451 | 12699415 |
| chr_1 | g10917 | g10917.t1 | cds | g10917.t1.CDS3 | 12698451 | 12699415 |
| chr_1 | g10917 | g10917.t1 | exon | g10917.t1.exon4 | 12699475 | 12699596 |
| chr_1 | g10917 | g10917.t1 | cds | g10917.t1.CDS4 | 12699475 | 12699596 |
| chr_1 | g10917 | g10917.t1 | exon | g10917.t1.exon5 | 12699663 | 12699706 |
| chr_1 | g10917 | g10917.t1 | cds | g10917.t1.CDS5 | 12699663 | 12699706 |
| chr_1 | g10917 | g10917.t1 | exon | g10917.t1.exon6 | 12699762 | 12699809 |
| chr_1 | g10917 | g10917.t1 | cds | g10917.t1.CDS6 | 12699762 | 12699809 |
| chr_1 | g10917 | g10917.t1 | exon | g10917.t1.exon7 | 12699871 | 12699888 |
| chr_1 | g10917 | g10917.t1 | cds | g10917.t1.CDS7 | 12699871 | 12699888 |
| chr_1 | g10917 | g10917.t1 | exon | g10917.t1.exon8 | 12699943 | 12700000 |
| chr_1 | g10917 | g10917.t1 | cds | g10917.t1.CDS8 | 12699943 | 12700000 |
| chr_1 | g10917 | g10917.t1 | exon | g10917.t1.exon9 | 12700073 | 12700104 |
| chr_1 | g10917 | g10917.t1 | cds | g10917.t1.CDS9 | 12700073 | 12700104 |
| chr_1 | g10917 | g10917.t1 | exon | g10917.t1.exon10 | 12700170 | 12700221 |
| chr_1 | g10917 | g10917.t1 | cds | g10917.t1.CDS10 | 12700170 | 12700221 |
| chr_1 | g10917 | g10917.t1 | exon | g10917.t1.exon11 | 12700286 | 12700307 |
| chr_1 | g10917 | g10917.t1 | cds | g10917.t1.CDS11 | 12700286 | 12700307 |
| chr_1 | g10917 | g10917.t1 | exon | g10917.t1.exon12 | 12700361 | 12700927 |
| chr_1 | g10917 | g10917.t1 | cds | g10917.t1.CDS12 | 12700361 | 12700927 |
| chr_1 | g10917 | g10917.t1 | TSS | g10917.t1 | NA | NA |
| chr_1 | g10917 | g10917.t1 | TTS | g10917.t1 | NA | NA |
Sequences
>g10917.t1 Gene=g10917 Length=2703
ATGTGTCGATCGTGCTTGATGGAAACAGAAGAGGAATTGAATGAAATTTTTGGTCAACAA
GATGCGCCAGAAACAATAAATTTAAGCCAAATATTACTTCAATTAACAGCAAACATTCAA
ATTGACGTAAATGATGGGATGCCCGATAAATTGTGTAAAGAATGCACTGAAAAGGCTTAT
TTAGCATATAATTTTAAAATAACATTGGAACAAAGCGATGCAACACTTCGTAGTGTCTTA
TTTAAGGATCCAACTTTAAAAAAAGATTCAGTGTTTAATGAAGGCCATACATATCTTGGA
ATGGGTATTAAAACTGAAATTGCCTTTGTAGACGCTGATCCTTTCATTGATGATGATGGT
GATTTTGACTATGTGCAGCAACAAACGACAGCAGTTCCGGCTGAAAGTATGACAACCGAA
AGTCAAAAATCTGAACAAGTTATGAACAATAATACGTATACGCAAAATGAGGGAAATGAA
ATTCTTGAATCTGATGAGAATGCAGGAGAGGAAGATGAAGATGAAGAGGAGGATGAGGAT
GAAGAGGAAGATGAAGAAAATGAGAATGAAAATGTTGGAGATAAATCACCTAAAGAAAAG
ACTAAAAAGAAGCCCATTTCTCCTAAAATAGAGAATATTGACTATATAAAAGATGAAGAT
GGAAAATTCATCTGTCAGATTTGCAATAAGAAGCTAGTAGACAAAAAAGGCCTTAATCTT
CATTTAAGACTTCATACAGGCGAAAATTTAAAACGATGCAATATTTGCAATCGCGGCTTC
ATTAAAAGCGATCATCTAAAGCGTCATCGTCTTGTACATGAGAAATCAGTGAACTGTGAA
TATTGTGATGAATCATTCATCACACGTTCTGATTATAAAAGTCATGTAAAGGAAGAACAT
CTTGATGAAGAAGCAAGTCAAGAATCATCAGAAAAGTTACCAAAGATTCATCGTATCCGT
CCAAATCACATGAGTGCAATTTGTAAAATTTGCGACAAGAAATTCCAAAGAATTTCCACA
TTGCGAACACATTTAAATCAACATTTGATGTCAACTTCATTTGATGATGCAGAAATCAAA
AATAAAATATTTCTGTTCAATCCTCTCGAAATTGATTTAGAAAAGGCCTCAAATCAAGAT
TTACATTTGTATGTAAAGAGCAAATTAAATGAGAATGAATGTGAAAAGTTTTATCAAATT
GTTACTCGTGATGGACATGAATTATTATTGAGTGATTCAGAGACAGAAGATGAAGGAGAA
ATATGTCATCCTGATGATAGAATTGAGCTTGCTATTGGAAATATTGAACAAACTCAAAAT
AATCAAAAACTTTATACTTGTACCAGATGTATTAAAACATTTAAACGTAGCAAAGACTCG
TTAAGTCACATGATGACTGATCATATTCATGAACTTGAGGAATTCATTGATAAATGCTCT
CTATGCAATCAATCATTTCCTAATAGCTACACTTTACAAAAACATTTAAAATCACAATGT
GAAAATAAAACAAAGAAATTAACTTGTAACACTTGCGGTAAAAAATTCATGTGGCTTGAT
TCGATGGCTAAGCATATTGAAAATGAACATCCTGGCACAGAGAGAATTAAATTATACACA
TGTGAACTTTGTGGAAAAGCATTTTCGAGATCGGAACATCTTGAGAGACATCGTAAGACA
CACAATCCATCAGAAAAGAAATTTGAATGTACTGTGTGTCAGAAAAAATTTAATCGAAAA
GATAATTTAAGATCGCATATGAAAATTCATAAAGACAATCGTGATGACGAGGACAAACAT
TTATGCATTTATTGTGGTAGAGCATTTAGCAATTCTTCAAATTTGATTGTTCATATGAGA
AGACATACCGGTGAAAAGCCCTACAAATGCGATCTATGTGAAAAAGGATTTCCGAGATCA
TCAGATTTACAATGTCATCGTCGAACACATACAGGAGAACGACCTTGCCTTTGTACCGTT
TGTGGAAAAGGATTTTCGAGGAGTAATAAACTCGTCCGTCACATGAGAATTCACACTGGA
ATTAGACCATACCAATGCACATATTGCGATCGTGCCTTTACACAATCAAATGATTTGACT
TTACATATAAGACGACATACGGGTGAGAGACCATATGTATGTGGAATATGTGGAGATAAA
TTTATTCAAGGAACAGCATTAAAGCAGCATCAGCGAATGCAAAATCATTTTGATGACGGC
ACACAACCAAGCCCATATGCAAGCATAAGTGTCAATAATCCAAGTCGTTTTACAAATTCA
AATCTTGTTAGTCGAAGATATATTGCACAAGCACAGCAGCAACAACAACTTGATCAAAAT
TCACAAGTTCCTATTAAACCTGTTATTCCACGACGAAGAGCAGCAGCAGCCGCCAACAAT
AACAACAATTTGAATGGGAACAATAATCATTTACAGCAAATTCAAATTCCAGTACAAAAT
CAAATGCTTCAATTGCAACCTACAACATCAGCAACAATTATTATGAATCAACAAGACAAT
GTAACAGCTGACATTAGAACACCTTCACCTCATACACCATCTACTTTACAGGACATCAAA
CCAAATATACAAAATTTAAACTTGCCTCAATATAATGGTCAAACAATGGCAAACAACATG
GAAATTACCACAGCAACACTCTTTACAATGTCATTTAACCAAAACTTTCAAAATCATAAT
TAA
>g10917.t1 Gene=g10917 Length=900
MCRSCLMETEEELNEIFGQQDAPETINLSQILLQLTANIQIDVNDGMPDKLCKECTEKAY
LAYNFKITLEQSDATLRSVLFKDPTLKKDSVFNEGHTYLGMGIKTEIAFVDADPFIDDDG
DFDYVQQQTTAVPAESMTTESQKSEQVMNNNTYTQNEGNEILESDENAGEEDEDEEEDED
EEEDEENENENVGDKSPKEKTKKKPISPKIENIDYIKDEDGKFICQICNKKLVDKKGLNL
HLRLHTGENLKRCNICNRGFIKSDHLKRHRLVHEKSVNCEYCDESFITRSDYKSHVKEEH
LDEEASQESSEKLPKIHRIRPNHMSAICKICDKKFQRISTLRTHLNQHLMSTSFDDAEIK
NKIFLFNPLEIDLEKASNQDLHLYVKSKLNENECEKFYQIVTRDGHELLLSDSETEDEGE
ICHPDDRIELAIGNIEQTQNNQKLYTCTRCIKTFKRSKDSLSHMMTDHIHELEEFIDKCS
LCNQSFPNSYTLQKHLKSQCENKTKKLTCNTCGKKFMWLDSMAKHIENEHPGTERIKLYT
CELCGKAFSRSEHLERHRKTHNPSEKKFECTVCQKKFNRKDNLRSHMKIHKDNRDDEDKH
LCIYCGRAFSNSSNLIVHMRRHTGEKPYKCDLCEKGFPRSSDLQCHRRTHTGERPCLCTV
CGKGFSRSNKLVRHMRIHTGIRPYQCTYCDRAFTQSNDLTLHIRRHTGERPYVCGICGDK
FIQGTALKQHQRMQNHFDDGTQPSPYASISVNNPSRFTNSNLVSRRYIAQAQQQQQLDQN
SQVPIKPVIPRRRAAAAANNNNNLNGNNNHLQQIQIPVQNQMLQLQPTTSATIIMNQQDN
VTADIRTPSPHTPSTLQDIKPNIQNLNLPQYNGQTMANNMEITTATLFTMSFNQNFQNHN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 36 | g10917.t1 | Coils | Coil | Coil | 175 | 195 | - |
| 27 | g10917.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 217 | 274 | 1.0E-12 |
| 29 | g10917.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 275 | 361 | 7.8E-8 |
| 28 | g10917.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 434 | 505 | 2.1E-7 |
| 26 | g10917.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 506 | 532 | 1.6E-5 |
| 32 | g10917.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 537 | 561 | 5.6E-9 |
| 33 | g10917.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 564 | 592 | 8.2E-10 |
| 31 | g10917.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 599 | 627 | 1.5E-13 |
| 35 | g10917.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 628 | 652 | 4.9E-14 |
| 30 | g10917.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 653 | 678 | 1.6E-13 |
| 34 | g10917.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 679 | 705 | 4.0E-13 |
| 25 | g10917.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 706 | 736 | 1.4E-9 |
| 66 | g10917.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 205 | - |
| 65 | g10917.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 190 | - |
| 64 | g10917.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 205 | - |
| 14 | g10917.t1 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 165 | 348 | 3.1E-136 |
| 13 | g10917.t1 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 418 | 610 | 3.1E-136 |
| 15 | g10917.t1 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 509 | 651 | 3.1E-136 |
| 12 | g10917.t1 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 602 | 747 | 3.1E-136 |
| 1 | g10917.t1 | Pfam | PF07776 | Zinc-finger associated domain (zf-AD) | 1 | 77 | 1.8E-11 |
| 7 | g10917.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 252 | 273 | 0.0052 |
| 8 | g10917.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 279 | 300 | 0.0014 |
| 2 | g10917.t1 | Pfam | PF12874 | Zinc-finger of C2H2 type | 328 | 346 | 0.0061 |
| 9 | g10917.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 478 | 497 | 0.003 |
| 10 | g10917.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 539 | 561 | 3.6E-6 |
| 4 | g10917.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 568 | 590 | 9.7E-6 |
| 11 | g10917.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 604 | 622 | 6.4E-5 |
| 5 | g10917.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 628 | 650 | 0.0063 |
| 6 | g10917.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 658 | 678 | 2.1E-4 |
| 3 | g10917.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 684 | 706 | 6.2E-6 |
| 40 | g10917.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 225 | 245 | - |
| 45 | g10917.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 253 | 273 | - |
| 44 | g10917.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 279 | 300 | - |
| 38 | g10917.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 328 | 348 | - |
| 37 | g10917.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 447 | 468 | - |
| 47 | g10917.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 541 | 561 | - |
| 48 | g10917.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 570 | 590 | - |
| 41 | g10917.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 602 | 622 | - |
| 39 | g10917.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 630 | 650 | - |
| 43 | g10917.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 656 | 678 | - |
| 42 | g10917.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 686 | 706 | - |
| 46 | g10917.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 714 | 736 | - |
| 70 | g10917.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 223 | 250 | 11.78 |
| 69 | g10917.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 251 | 278 | 9.93 |
| 74 | g10917.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 277 | 305 | 9.93 |
| 73 | g10917.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 326 | 353 | 9.078 |
| 78 | g10917.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 445 | 475 | 9.203 |
| 72 | g10917.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 477 | 504 | 8.912 |
| 67 | g10917.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 507 | 535 | 9.993 |
| 68 | g10917.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 539 | 566 | 14.212 |
| 80 | g10917.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 568 | 595 | 13.256 |
| 71 | g10917.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 600 | 627 | 16.041 |
| 79 | g10917.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 628 | 655 | 16.519 |
| 77 | g10917.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 656 | 683 | 14.981 |
| 76 | g10917.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 684 | 711 | 16.373 |
| 75 | g10917.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 712 | 741 | 10.99 |
| 49 | g10917.t1 | SMART | SM00868 | zf_AD_2 | 1 | 79 | 4.9E-4 |
| 57 | g10917.t1 | SMART | SM00355 | c2h2final6 | 223 | 245 | 0.014 |
| 60 | g10917.t1 | SMART | SM00355 | c2h2final6 | 251 | 273 | 0.21 |
| 56 | g10917.t1 | SMART | SM00355 | c2h2final6 | 277 | 300 | 0.017 |
| 62 | g10917.t1 | SMART | SM00355 | c2h2final6 | 326 | 348 | 0.063 |
| 54 | g10917.t1 | SMART | SM00355 | c2h2final6 | 445 | 468 | 1.6 |
| 58 | g10917.t1 | SMART | SM00355 | c2h2final6 | 477 | 497 | 77.0 |
| 61 | g10917.t1 | SMART | SM00355 | c2h2final6 | 507 | 530 | 0.051 |
| 63 | g10917.t1 | SMART | SM00355 | c2h2final6 | 539 | 561 | 2.9E-4 |
| 53 | g10917.t1 | SMART | SM00355 | c2h2final6 | 568 | 590 | 3.9E-5 |
| 51 | g10917.t1 | SMART | SM00355 | c2h2final6 | 600 | 622 | 0.0021 |
| 55 | g10917.t1 | SMART | SM00355 | c2h2final6 | 628 | 650 | 0.0056 |
| 59 | g10917.t1 | SMART | SM00355 | c2h2final6 | 656 | 678 | 0.0053 |
| 50 | g10917.t1 | SMART | SM00355 | c2h2final6 | 684 | 706 | 2.3E-4 |
| 52 | g10917.t1 | SMART | SM00355 | c2h2final6 | 712 | 736 | 0.44 |
| 16 | g10917.t1 | SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 1 | 79 | 9.12E-9 |
| 21 | g10917.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 223 | 273 | 4.64E-12 |
| 18 | g10917.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 260 | 303 | 2.29E-5 |
| 17 | g10917.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 327 | 465 | 4.93E-6 |
| 24 | g10917.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 485 | 548 | 1.05E-7 |
| 22 | g10917.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 537 | 590 | 7.0E-14 |
| 19 | g10917.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 600 | 650 | 8.54E-17 |
| 20 | g10917.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 637 | 693 | 9.73E-20 |
| 23 | g10917.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 678 | 730 | 3.31E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
- This transcript has been annotated with K09228 (KRAB domain-containing zinc finger protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
